Pseudofrankia inefficax: FraEuI1c_6144
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Entry
FraEuI1c_6144 CDS
T01354
Name
(GenBank) helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FraEuI1c_6144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fri03019
]
FraEuI1c_6144
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_6144
Enzymes [BR:
fri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FraEuI1c_6144
Messenger RNA biogenesis [BR:
fri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FraEuI1c_6144
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FraEuI1c_6144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
UPRTase
Motif
Other DBs
NCBI-ProteinID:
ADP84128
UniProt:
E3J223
LinkDB
All DBs
Position
complement(7574181..7576760)
Genome browser
AA seq
859 aa
AA seq
DB search
MAADGTCAHRSSDTAPSDECGRVMAVDASRLAPEVAAATGSVEVAALDTRERAQQLLRQL
AGPHARLREDQWQAIDALVNRRRRVLLVQRTGWGKSAVYFLATALLRERGALPAAATGAA
GAAVATGAWNDEPWPVEPPDDEDGYADFGHEPEDDRFEPPDYDASSVPQAPEDLAAGWAE
PGVPPPGRPGWNAAARNKVGPTVIVSPLLALIRNQAQAAARLGIRAGEIHSGNVTEWDEV
YAALRSGDLDVLLVGPERLNNPAFRDDYLPELAASTGLLVIDEAHCISDWGHDFRPDYRR
LRTLVAGLGPDVPVLATTATANSRVVDDVAEQLGAGGHDGVTLGAARGAGGSALGDGTGE
AAGTLVLRGALDRESLRLAVVTLPSAEARFGWLAEHLDRLPGSGIVYTLTKPAAEELTGF
LRAQGHTVAVYHGGTEPAERIAAEEDLLANRVKALVATSALGMGFDKPDLGFVVHVGAPS
SPISYYQQIGRAGRGVERAEVVLLPAAEDRDIWKYFADTSFPPEAIVRDVLAALAGSGRA
LSTQALLAAVNVGSGRLESMLKVLDVDGAVRRVRGGWESTGRPWYYDAERYARLAAARAA
EQQAMLDYLATGDCRMEFLRRQLDDPYAAACGRCDRCTGQSWDADVSDAARERARTELRR
PGVVLEPRKMWPTGMKTLGVSLSGRIPAGAGAEPGRVLARLNDVGWGNRLRPMLAPGAPD
QPIPDDLVQAIVETLKAWDWKRRPAAVVALPSRSRPRLVESVAGRIAAIGRLPLLGALDR
VADGPSAGASHNSAYRLAGLVSAFTVPPAVATGIARADGPVLLVDDVVATGWTMTVAARL
LREAGAPAVLPFALAVETG
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggacggcacgtgcgcgcaccgctcctcggacacagctccttcggacgagtgc
ggacgggtgatggcggtggacgcgagcaggctggcgccggaggtggccgccgccacgggt
tccgtcgaggtggcggccctggacacccgcgagcgggcgcagcagctgctgcggcagctg
gccgggccgcatgcccggctgcgtgaggatcagtggcaggcgatcgacgcgctggtcaac
cgacggcgccgggtgctgctggtgcagcggacgggctggggcaagtcggccgtctacttc
ctggcgaccgccctgttgcgcgagcgcggcgccctgccggccgccgcgaccggcgccgcc
ggggcggccgtggccacgggtgcctggaacgacgagccgtggccggtggagccgccggac
gacgaggacggctacgcggactttggccacgagcccgaggacgaccggttcgagccgccg
gactacgacgcgtcgtccgtgccgcaggcgcccgaggaccttgccgccggctgggccgag
cccggcgtgccgccgcccggccggcccgggtggaacgccgcggcgcgcaacaaggtcggc
ccgaccgtcatcgtctcgcccctgctcgcgctgatccgcaaccaggcccaggccgcggcc
cggctgggcatccgggccggggagatccactcgggcaacgtcaccgagtgggacgaggtc
tacgcggcgctgcggtccggcgacctggacgtgctcctcgtcgggccggagcggctgaac
aaccccgccttccgggacgactacctgccggagctggccgcctcgaccggcctgctcgtg
atcgacgaggcgcactgcatctccgactggggccatgacttccggcccgactaccgccgg
ctgcgcacgctggtcgccggtctcggcccggatgtcccggtgctcgccaccacggcgacc
gcgaacagcagggtcgtcgacgacgtcgcggagcagctcggagccggcggccacgacggc
gtcaccctgggcgctgccaggggcgccggcgggagcgcactcggcgacggaacgggggag
gcggccgggacgttggtgctgcgcggcgccctggaccgggaaagcctgcgcctggccgtc
gtcacgctgccgtcggccgaggcgaggttcggctggctcgccgagcatctcgaccggctg
cccgggtcgggcatcgtctacacgctcaccaagccggccgccgaggagctgacgggcttc
ctgcgggcgcagggacacaccgtcgccgtgtaccacggtggcaccgagccggcggagcgc
atcgccgccgaggaggacctgctcgcgaaccgggtgaaggcgctggtcgcgacctcggcg
ctcggcatgggcttcgacaagccggacctgggcttcgtcgtccacgtcggcgcgcccagc
tcgccgatcagctactaccagcagatcggccgcgccggccgtggcgtcgaacgggccgag
gtggtgctgctcccggccgccgaggaccgggacatctggaagtacttcgcggacacgtcc
ttcccgcccgaggcgatcgtccgtgacgtcctcgccgccttggccggctccgggcgagcc
ctgtcgacgcaggccctgctggcggcggtcaacgtcggctcgggccggctggagtcgatg
ctcaaggtgctcgacgtcgacggcgcggtccgccgggtccgcggcggctgggagtcgacc
ggccggccgtggtactacgacgccgagcggtacgcgcggctcgccgcggcgcgggccgcc
gagcagcaggcgatgctcgactacctggccaccggtgactgccggatggagttcctgcgc
cgccagctcgacgacccgtacgcggccgcctgtggccgctgcgaccggtgcaccggacag
agctgggacgcggacgtctcggacgcggcccgggaacgggccaggaccgagctgcgccgc
cccggcgtcgtcctggagccgcgcaagatgtggccgaccgggatgaagaccctcggggtg
agcctgtctggacggattccggccggcgccggggccgagccgggccgggtgctcgccagg
ctcaacgacgtgggctgggggaaccggctacgcccgatgctcgctccgggagccccggac
cagccgataccggatgatctggtccaggcgatcgtcgagacgctgaaggcgtgggactgg
aagcggcgcccggcggcggtcgtggcgctgccgtcgcggtcccggccgcggctggtcgag
agcgtcgccggccggatcgccgcgatcggccggctgccgctgctgggcgcgctcgaccgg
gtcgccgacgggccgtccgccggcgcctcgcacaacagtgcctaccggctcgccggcctc
gtcagcgcgttcaccgtcccaccggcggtcgccaccgggatcgcgcgggccgacgggccg
gttctgctggtcgacgacgtggtcgcgacgggctggacgatgacggtcgccgcgcgcctg
ctgcgtgaggccggagccccggccgtcctcccgttcgcgctggccgtcgagaccggctga
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