Pseudofrankia inefficax: FraEuI1c_6234
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Entry
FraEuI1c_6234 CDS
T01354
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FraEuI1c_6234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fri03021
]
FraEuI1c_6234
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_6234
Enzymes [BR:
fri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FraEuI1c_6234
Transcription machinery [BR:
fri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FraEuI1c_6234
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FraEuI1c_6234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ADP84218
UniProt:
E3J3C1
LinkDB
All DBs
Position
complement(7672365..7676258)
Genome browser
AA seq
1297 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITKVDVDGRHRDLPTLEARIGVEKQGMEDRKNADVEARQRKLESD
LAQLEAEGAKGDARRKVRESAEREMRQIRDRAQRKIDDLDRVFDRFKSMKVQDLEPDELL
YRELRDRFGQYFEGGMGAEALQRRLADFDLDAEAESLRETIRTGKGQKKARALKRLKVVS
AFLSTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVYHLSRLAEGGGLGEG
RSFSSVAEVQMAYDAREVGLQSLIKVRLRDHTPPTDWEAPADWIPGDPFTLETTFGRCLL
NEALPEGYPFINELLHKRDQAAIVNDLAERYPKAQVAATLDALKSAGFYWATRSGVTVAI
EDVIAPPNKGEILAKFEDLAEKVQKQFERGFLSDDERRSELVQIWTNATSEVAKAMEENF
PPTNPVATLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANFREGLSVLEYFIST
HGARKGLADTALRTADSGYLTRRLVDVSQDVIVRDDDCGTERGVSTRIATKDARTGVLVR
DRYAETSAYARTLAQDAVDGTGEVIVPAGADLGDVVIGQLIEAGIETVRVRSALTCESRR
GVCAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHAGGVAGDDITQGLPRV
VELFEARSPKGKAPISEVVGRVKIEETDKTLKVVIVPDDGSEEMPYPVPRRSRLRVAEGE
HIEVGTQLIDGAVDPHEVLRILGPRQVQLHLVDQVQEVYRSQGVSIHDKHIEIIIRQMLK
RVNVLESGETTLLPGELVERGRFEAENRRVVEANGQPASARPVLMGITKASLATESWLSA
ASFQETTRVLTDAAINARSDSLVGLKENVIIGKLIPAGTGITRYRNIRVEPTEEARAQMY
TVGGFEDGGTVEYGAFGTGSGQAVPLDEFDFGSRDYR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
ttgctggacgtcaacttcttcgacgagctgcgcatcggcctggccaccgcggacgacatc
cgccagtggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggtaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgactcgcgcgaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccgagccggctcggctacctgctcgacctg
gcgccgaaggaccttgagaaggtcatctacttcgccgcctacatgatcaccaaggtcgac
gtcgacgggcgtcaccgtgacctgccgaccctcgaagcccgcatcggcgtcgagaagcag
ggcatggaggaccgcaagaacgcggacgtcgaggcccgccagcgcaagctggagtccgac
ctggcccagctcgaggccgagggcgccaagggcgacgcgcgccgcaaggtgcgtgagtcg
gccgagcgcgagatgcgccagatccgcgaccgcgcccagcgcaagatcgacgatctggac
cgcgtcttcgaccggttcaagagcatgaaggtccaggacctggagccggacgagctgctc
taccgcgagctgcgcgaccggttcggccagtacttcgagggcggcatgggcgccgaggcg
ctccagcgccggctcgccgacttcgacctggacgccgaggccgagtcgctgcgggagacc
atccgcaccggcaagggtcagaagaaggcccgcgcgctcaagcggctcaaggtcgtctcg
gccttcctgagcacccgcaactccccgatggggatggtgctggactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacgtccgacctg
aacgacctgtaccggcgcgtcatcaaccggaacaaccggctgaagaggctgctggacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggtcccggtaaccgcccgctgaag
tcgctgtcggacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgcgcgcgg
ccggtcgtctgggacgtgctcgaagaggtcatcaccgagcaccccgtgctgctgaaccgg
gcgccgaccctgcaccgtctcggcatccaggcgttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcccggatcctgatgctg
tccagcaacaacatcctctcgcccgcgtccggccgtccgctggccatgccgagcctcgac
atggtcaccggggtgtaccacctgtcccggctggccgagggcggcgggctcggtgagggc
cggtcgttctccagcgtcgccgaggtgcagatggcctacgacgcgcgagaggtcgggctg
cagtcgctgatcaaggtccggctgcgcgaccacacgccgccgaccgactgggaggcgccg
gcggactggatcccgggtgacccgttcaccctggagacgacgttcggccgctgcctgctg
aacgaggcgctgcccgagggctacccgttcatcaacgagctgctgcacaagcgcgaccag
gccgcgatcgtcaacgacctggccgagcggtacccgaaggcccaggtcgccgcgaccctg
gacgccctcaagagcgccggcttctactgggccacccggtccggtgtcaccgtcgcgatc
gaggacgtcatcgcgccgccgaacaagggcgagatcctcgccaagttcgaggacctggcc
gagaaggtccagaagcagttcgagcgtggcttcctgtccgacgacgagcgtcgcagcgag
ttggtccagatctggaccaacgcgacgagcgaggtcgcgaaggcgatggaggagaacttc
ccgccgaccaaccccgtcgccacgctcgtcaactcgggcgcggccggaaacatgatgcag
atccggcagctcgccggcatgcgtggcctggtctcgaacccgaagggcgagatcatcccg
cggccgatcaaggcgaacttccgcgagggcctgtccgtgctggagtacttcatctccacg
cacggtgcccgtaagggtctggccgacaccgcgctgcggaccgccgactccggctacctg
acccgccggctcgtcgacgtcagccaggacgtcatcgtccgggacgacgactgcggcacc
gagcgcggcgtctccacccggatcgcgaccaaggacgcccgcaccggcgtgctcgtccgc
gaccggtacgcggagacctccgcgtacgcgcggacgctggcccaggacgcggtcgacggg
acgggcgaggtcatcgtcccggccggcgccgacctcggcgacgtggtcatcggccagctg
atcgaggccgggatcgagacggtccgggttcgctcggcgctgacctgcgagtcccgccgc
ggcgtgtgcgcccagtgctacggccggtcgctcgcgaccggcaagctggtcgacgtcggc
gaggcggtcggcatcgtcgccgcccagtcgatcggtgagccgggtacccagctgaccatg
cgtaccttccacgcgggtggcgtcgccggtgacgacatcacccagggtctgccgcgtgtc
gtcgagctcttcgaggcccgtagccccaagggcaaggcgccgatcagcgaggtcgtcggc
cgagtcaagatcgaggagacggacaagaccctcaaggtcgtcatcgtccccgacgacggc
tcggaggagatgccctacccggtgccgcggcgctcgcgcctgcgggtcgccgagggcgag
cacatcgaggtgggcactcagctcatcgacggtgcggtcgacccgcacgaggtgctgcgc
atcctcgggccacgccaggtgcagctgcacctcgtcgaccaggtccaggaggtgtaccgg
tcgcagggtgtgtcgatccacgacaagcacatcgagatcatcatccgccagatgctcaag
cgggtgaacgtgctggagtcgggtgagacgacgctgctgcccggcgagctggtcgagcgg
ggcaggttcgaggccgagaaccgtcgcgtcgtcgaggccaacggccagccggcgtcggcc
cggccggtgctgatgggtatcaccaaggcgtcgctggccaccgagtcgtggctgtcggct
gcctccttccaggagaccacccgagtgctcaccgacgcggcgatcaacgcccggtcggac
tcgctggtcggcctgaaggagaacgtcatcatcggcaagctcatcccggctggtaccggc
atcacccggtaccgcaacatccgggtcgagccgaccgaggaggcgcgggcccagatgtac
acggtcggcggcttcgaggacggcggcacggtcgagtacggcgccttcggcaccggcagc
ggccaggccgtcccgctcgatgagttcgacttcggcagccgcgactaccgttag
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