Pseudofrankia inefficax: FraEuI1c_6461
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Entry
FraEuI1c_6461 CDS
T01354
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FraEuI1c_6461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_6461
Enzymes [BR:
fri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FraEuI1c_6461
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FraEuI1c_6461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
HHH_RecD2
AAA_30
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
AAA_22
PIF1
NAT10_TcmA_helicase
AAA_16
NPHP3_N
PhoH
nSTAND3
UvrD_C
AAA
DEAD
HTH_IclR
ABC_tran
DAP3
AAA_10
Motif
Other DBs
NCBI-ProteinID:
ADP84442
UniProt:
E3J778
LinkDB
All DBs
Position
complement(7932283..7934505)
Genome browser
AA seq
740 aa
AA seq
DB search
MPGSDGARWTLLDATLERVTFASEETGYTVAKVDPGRGGDLVTVVGSLLGAAPGEFLRMR
GRWGSHPQHGRQFQVEDYTTVLPATVQGIRRYLGSGLIKGIGPRLAENIVDHFGADALDV
IDTEPGRLIEVPKLGPKRVKAITAAWDEQRAIKEVMVFLQGVGVSTSLAVKIYKKYRDGS
VDVVRREPYRLASEVWGIGFKTADTIAQAVGIPHDAPERIKAGLQYTLSESTNDGHCYLP
EQRLLTDAAKILTVEVAQVIDALGELVTEEGVVREQLPGEDPAVPVVGYYLVPFHRAEVS
LAGQLRRLLHADTDRLGVFTTVDWDAAWRWLQGRTGVELAVAQREAVRLALTCKVAVLTG
GPGCGKSFTVRAIVEMATAKKAKVLLAAPTGRAAKRLTELTGHPAATVHRLLELRPGGDA
AYDRDRPLDADLVVVDEASMLDLLLANKLARAVAPGAHLLLVGDVDQLPSVGAGQVLRDL
LADGTPVPRVRLSQVFRQAAQSGVVTNAHRINAGEFPHVKGMADFFLFACEEAEDAAAMT
VDVVANRIPRRFGLDPRADVQVLAPMHRGHAGAGTLNGLLQEALTPGRPGTPERRFGGRV
FRVGDKVSQIRNNYDKGAAGVFNGTLGVVTALDPVEQTLTVRTDEGETISYDFTELDELV
HAYALTIHRSQGSEYPAVVIPVTMSAWMMLQRNLLYTAITRAKKLVVLVGSTKAISRAVH
TATAGRRYTRLAHRLHQTAP
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtgccggggtcggatggtgcgcggtggacgttgttggacgcgacgttggaacgggtgacg
ttcgccagtgaggagaccgggtacacggtcgcgaaggtcgatcctggccggggtggtgat
ctggtcacggtcgtcgggtcgctgttgggggcggcgccgggtgagttcctgcggatgcgg
ggccggtggggtagtcatccccagcatggccggcagttccaggtcgaggactacacgacg
gtcctgccagcgacggtgcagggcatccgccggtatctcggctccggtctgatcaaaggg
atcgggccgcggctcgcggagaacatcgtcgaccacttcggcgccgacgccctcgatgtg
atcgacaccgagcctggccggctgatcgaggttcccaagctcggcccgaaacgggtgaag
gcgatcaccgccgcctgggacgagcagcgggcgatcaaagaggtgatggtcttcctccaa
ggcgtcggtgtgtccacgtctctcgccgtgaagatctacaagaagtatcgggacgggtcg
gtggacgtggtccgccgggagccgtaccggctggcgagcgaggtgtggggcatcgggttc
aagaccgcggacacgatcgcccaggccgtcggtatcccgcacgacgcccccgagcggatc
aaggccgggttgcagtacacgctgtcggagtcgaccaacgacgggcactgctacctgccc
gagcagcggctcctcaccgacgcggcgaagatcctcaccgtcgaggtcgcccaggtgatc
gacgccctcggcgagctcgtcaccgaggaaggggtcgtgcgcgaacagctgccgggtgag
gacccggcggtgccggtcgtcggctactacctggtgccgtttcaccgggccgaggtgtcg
ttggccggccagctgcggcgtctgttgcacgccgacaccgaccggctcggcgtgttcacc
acggtggactgggacgcggcctggcgctggctgcagggccggacgggggtggagctggct
gtggcgcagcgggaggcggtacgcctcgccctgacctgcaaggtcgcggtcctgaccggg
gggccgggctgcgggaagagtttcacggtccgggcgatcgtggagatggcgacggcgaag
aaggcgaaggtgctgctggccgcgccgaccggtcgggccgcgaaacggctcaccgaactg
accggccacccggcggcgaccgtgcaccgcctgttggagctacgccccggcggcgacgcc
gcctacgaccgcgaccgccccctggacgccgacctggtggtggtcgatgaggcctccatg
ctcgacctgttgctggcgaacaagctcgcccgcgccgtcgcgccaggagcgcatctgctg
ctcgtcggggacgtcgaccagctaccgtccgtcggtgccggccaggtactgcgtgacctg
ctcgccgacggcacccccgtgccgcgtgtccggctgtcgcaggtgtttcgccaggccgcc
cagtcaggcgtcgtcaccaacgcccaccggatcaacgccggcgagttcccccacgtgaag
ggcatggcggacttcttcctgttcgcctgcgaggaagccgaggacgccgcggccatgacg
gtggacgtggtcgcgaaccggatcccgcgccggttcggcctcgatccccgcgccgatgtc
caggtcctcgcgcccatgcaccgcggccacgccggagccggcacgctcaacggcctgctc
caggaggcgctcaccccgggccggcccggcacgccggagcggcggttcggcgggcgggtg
ttccgggtcggcgacaaggtcagccagatccgcaacaactacgacaaaggcgccgccggt
gtcttcaacggcaccctcggcgtcgtcaccgccctcgaccccgtcgagcagaccctcacc
gtacgcaccgacgaaggcgagaccatcagctacgacttcaccgagcttgatgagctcgtc
cacgcgtacgcgctgacgatccaccgctcccagggcagcgaatacccggccgttgtcatc
ccggtcacgatgagcgcctggatgatgttgcaacgcaacctgctctacaccgccatcacc
cgcgccaagaaactcgtcgtcctcgtcggatcgaccaaagccatcagccgcgccgtccac
accgccaccgcgggccgccgctacacccgcctcgctcaccgcctgcaccagaccgccccg
tga
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