Pseudofrankia inefficax: FraEuI1c_7090
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Entry
FraEuI1c_7090 CDS
T01354
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
fri
Pseudofrankia inefficax
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fri03016
]
FraEuI1c_7090
Enzymes [BR:
fri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
FraEuI1c_7090
Transfer RNA biogenesis [BR:
fri03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
FraEuI1c_7090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ADP85055
UniProt:
E3IYI4
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All DBs
Position
complement(8660749..8661294)
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AA seq
181 aa
AA seq
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MARLFVAATPPAEVIEAIGVAVALARPTAPALRWVDLARSHLTLAFLGSVEDALRAELTE
RLGRVARRHPPVDAVLAGVGRFGDRVLWAGVDGDLAPLAAGIRRAAQRSGVADLDPRPLR
AHLTLAYARPSTEPVDLRAVMAALGELPPLAWTVDRFDLVSSVLGPQPVYAVESSWSLTG
S
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggctgttcgtcgccgcgacgccgccggccgaggtcatcgaggcgatcggcgtg
gcggtggccctagcgagaccgaccgcgccggcgctgcgctgggtggacctggcccgcagc
catctgacgctcgcgttcctcggctcggtcgaggacgccctgcgcgccgagctgaccgag
cggctcggccgggtcgcgcgacgccatccaccggtggacgcggtcctggccggcgtcggg
cggttcggcgaccgggtcctgtgggccggggtcgacggcgacctggccccgctggccgcg
gggatccggcgcgcggcgcagcggtcgggcgtggccgacctggacccccgcccgctgcgg
gcccacctcacccttgcctacgcccggccctcgaccgagcccgtggacctgcgcgcggtg
atggccgccctgggcgaactgccgccccttgcctggacggtcgatcggttcgacctggtg
agcagtgtgctgggcccccagccggtctacgcggtcgagtcgagctggtcgttgaccggg
tcctga
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