Francisella sp. LA112445: FIP56_03930
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Entry
FIP56_03930 CDS
T08878
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
frl
Francisella sp. LA112445
Pathway
frl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIP56_03930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frl03019
]
FIP56_03930
03009 Ribosome biogenesis [BR:
frl03009
]
FIP56_03930
Enzymes [BR:
frl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FIP56_03930
Messenger RNA biogenesis [BR:
frl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIP56_03930
Ribosome biogenesis [BR:
frl03009
]
Prokaryotic type
rRNA processing factors
FIP56_03930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Flu_C_NS1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QIW09873
LinkDB
All DBs
Position
complement(804863..807562)
Genome browser
AA seq
899 aa
AA seq
DB search
MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELLVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPNGGGISRRVEGEDREKLKKYLKDLNIPKNMSVIARTACVECSFEELKHD
FDTLVELWSSISQTYHKIKKPALLHKESDIIVRTVRDHLKEDVREIIVDSKECFQDVKRQ
LGLLRQSFDINKVKFYNEELPLFTQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAMKDDTNEIRVQVPVDIAAYILNEKRDSIVDIERISEVRIMIIPNFNMESPKF
QMQRIWGSSYKSNRSSSDLIEDVYNVEIPKAGNKKVAAVDLSKAVDREVSAKVENKAKHN
EQRNQQAPQQKEETTTPKAKEQPSKKGFFAKLASVFTGTPSKPVETAKDSQKPNNKNNNS
NNNSQRAQTNKPQRDNKQRNDRDRNNNNNNLNDQRNKNKNNKAQDNSQKPQQRENNQRNE
RNNSDNRSNDRNKNKRNNDRFDKKPNNKNNNRSNNISLNNAEEVIDITKVKYSNQISENN
VDNIKKVISKNPDEFVSVMVKDVLENYDSLKDDGATKVNTEEKVKTQKYLKFNTISVDHE
INAIHEAKKEAEKALKEAQEKAKADQEKKVAVEEQEKVVIEEVKTDKEEVISQKTENKDA
KKKSAEPKASQTKEKSVEKNTKKESVKKDKPVEKNTQTTQQSEYINYSPALDFESQALI
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatattaatcaatagcaaaagtagcgaagaaacgaggatcgctaccttagat
aatggaaaacttatagacctagatatcgaaaatgtagatagagaacagaaaaaagctaat
atctataaaggatatatctctagaatagaacctagtttaaatgctatttttgtaaattat
ggtgaagagaaaaacggtttcctaccatttaaagaagtttcagaatactatctaaaagat
gttcctaatggcgaaaatattgctcctttattatctgaaggccaagaactattggtacaa
atagacaaagaagaacgtggagataaaggtgctgctttaactacatttatcacactagct
ggttcatacatggtactactaccaaacaaccctaatggtggtggtatttctcgtcgtgtt
gaaggagaagatagagagaagttaaaaaaatatttaaaagatctaaatatccctaaaaac
atgagcgtaatcgcaagaacagcgtgtgttgaatgctcttttgaagaactaaagcatgac
tttgatactctagttgagctatggtcttctatttcacaaacttatcacaaaattaagaaa
cctgcccttctacacaaagaaagtgacattattgtaagaacagtaagagatcacctaaaa
gaagatgtaagagagattatcgttgactctaaagaatgtttccaagatgttaaaagacaa
cttggtctattaagacaaagttttgatataaataaggttaaattctacaacgaagaacta
cctttatttacacagtttggtatagatcagcaaatcgagaatgcatataaaagagaaatt
cgtctaccatctggaggttctatagtaattgatactacagaggcattagttgcgatagat
gtaaactcatcaagagctaacaaagctgaagatgttgaaactacagcatttaaaactaac
ctagaagctgctgaagaagttgctagacagcttagaattagagatcttggtggtcttgtt
atagttgactttattgatatgtctttctatccaaatagaaaacaagttgaagaaaaacta
atggaagctttacagcaagataaagctcgtatccaaatgtcacgcatttctaagcttgga
cttgtagagatatcaagacaacgtttaagctcttcaataaatgaaagtgtaatgcaaaaa
tgccctcgttgtgaaggtcatggttttataaaaacaactcaagcaactgcccttacaatc
ttacgtaagatcagagctgaagctatgaaagatgatactaatgaaattagagttcaagtt
cctgtagatatagcagcttatattcttaatgaaaaaagagatagcatagttgatatcgaa
agaatttcagaagttagaattatgataatacctaatttcaacatggaatctcctaagttt
caaatgcaaagaatttggggctcaagctacaaatctaatcgctcaagctctgatttgatt
gaagatgtttataatgttgaaattccaaaagctggaaataagaaagttgcagctgttgat
ctaagcaaagctgtagatagagaagtctctgctaaagttgagaataaagctaaacataat
gagcaaagaaatcaacaagcacctcaacaaaaagaagaaactactacacctaaggctaaa
gagcaacctagcaaaaaaggcttctttgctaagctagctagcgttttcacaggtacacct
tcaaaaccagttgaaacagctaaagactctcaaaaaccaaacaataaaaataataactct
aataacaattctcaaagagcacaaactaataagcctcaaagagataataaacaacgcaat
gatcgtgatcgtaataacaataataacaacttaaatgatcagcgtaataaaaataaaaac
aataaagctcaagataactctcaaaagcctcaacaaagagagaacaatcaacgtaatgag
cgaaataacagcgataacagatcaaatgatcgtaataaaaataaaagaaataacgataga
tttgataaaaaaccaaataataaaaataacaacagaagcaataatattagccttaataac
gctgaagaagttattgatattacaaaggttaaatacagtaaccaaatatctgagaataat
gttgataatatcaaaaaggttatctctaaaaaccctgatgaatttgtctctgtaatggtt
aaagatgtcttagagaactacgatagtttaaaagatgatggggctacaaaagtcaacaca
gaagaaaaagtaaaaactcaaaaatacttaaagtttaatactatatctgttgatcatgag
ataaatgctattcatgaagctaaaaaagaagctgaaaaagctctaaaagaagctcaagaa
aaagctaaggctgatcaagagaaaaaagttgctgttgaagagcaagagaaagtagttatt
gaagaagtaaaaactgataaagaagaagtaatttctcaaaaaacagaaaacaaagatgct
aaaaagaaatcagctgagccaaaagcatctcaaactaaagaaaaatctgttgagaaaaat
actaaaaaagaaagtgttaaaaaagacaaacctgttgagaaaaatacacagacaacgcaa
cagtctgagtacattaattactctccagctttagactttgaatctcaagcacttatataa
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