Francisella sp. LA112445: FIP56_06395
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Entry
FIP56_06395 CDS
T08878
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
frl
Francisella sp. LA112445
Pathway
frl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIP56_06395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frl03019
]
FIP56_06395
03009 Ribosome biogenesis [BR:
frl03009
]
FIP56_06395
Enzymes [BR:
frl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIP56_06395
Messenger RNA biogenesis [BR:
frl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIP56_06395
Ribosome biogenesis [BR:
frl03009
]
Prokaryotic type
rRNA helicases
FIP56_06395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIW10344
UniProt:
A0A7L5CE22
LinkDB
All DBs
Position
complement(1319329..1321038)
Genome browser
AA seq
569 aa
AA seq
DB search
MNSETKKDFSQLGLSQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDLDSRDRAPQVLVLAPTRELAIQVAEQFEAFAKNIPNLDVACIYGGQEYGS
QIRALKKGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHV
SDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSSKSD
ILVATDVVARGIDLERISHVINYDMPGDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RILERFTGSPMQEVFMPSAKDLADSRIENFKARITSAIDKNKSLDKYKDVITSIRDELEL
DSDELLAVLTLLAQGKKSFFPREIQARDDKPRRDRNPRDNRRDNSRFERRGDRGDRNARF
DRPERKPRRSVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSKHICNISIQKDHTLV
DLPSNLPPKVVNHLKKVWVAGKKLNITAQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttggactaagtcaagatatcgtagac
actgttattaaattaggatatgaaaaccctacaccaattcaacagtatgctattccatat
atcttatcgggtagagatgtgcttggtcaagcacaaacgggtacaggtaaaactgcagca
tttgcattacctttaataaacaacatggatctagactctagagatagagctcctcaagtt
ttagtactagctcctactagagagctagctatacaagttgctgagcagtttgaagctttt
gcaaaaaacataccaaatttagatgttgcttgtatatatggtggtcaagagtatggctct
cagattagagctcttaaaaaaggtgttaaagttgtagtaggtactactggtcgtgtaatg
gatcatattgaaaaaggtacattacagcttgataacttaagagcattagtattagatgaa
gctgatgaaatgcttagaatgggctttatagacgatgtaagatttgtattaagccatgta
tcagatgagtgtcaaagattacttttctcggcaacgattcctacagatattgctgatatt
atacaagaatacttaagaaacccttgtaaaatacaagtaaaagcaaaaacaaaaacagct
aatactgtaactcaaaaatttatagtaattaaaggttttagaaagatagatgctctagat
agactacttgaagtagaagaaactgatggtgtgattatctttgttaaaactaagactagt
acaattgaagttgctgataatttaaaagctcttggttataaggttgcggcgataaatggt
gacatgcagcagtcacaaagagaatacattgttgatcagtttagaagttctaagtcagat
atattggttgctactgatgtagttgctagaggtatcgatcttgagagaatttctcatgtc
attaactatgatatgcctggcgatacagatacttatgtacacagaattgggcgtacaggt
agagctggacgtgaaggtacttctatttctttagttcctctaaaagaaatgagattctta
cgtattctagaaagatttacaggatctccaatgcaagaagtctttatgccaagtgcaaaa
gatttagcagatagtagaatagagaactttaaagctagaataacttcagcgatagataag
aataaatctttagataaatataaagatgtaattacaagtattcgtgatgagttagagctt
gattcagatgagcttttagctgtattgacattacttgctcaaggtaagaaatctttcttc
cctagagaaatacaagctagagatgataagcctcgcagagatagaaaccctcgtgataat
cgtagagataacagtagatttgagcgtagaggtgatcgtggtgatagaaatgctcgcttt
gataggcctgaaagaaaacctcgtagaagtgtaaatattgatttgactacatataagcta
gaagttggacgtgataatgatgttcagccaagaaatatagtaggtgctatagcaaatgaa
ggaaatattgatagtaagcatatctgtaatatttctattcaaaaagatcatactttggta
gatctgccttcaaatttacctcctaaggttgtgaatcatcttaaaaaagtatgggttgct
ggtaaaaaactaaatattacagctcaataa
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