Francisella sp. LA112445: FIP56_08970
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Entry
FIP56_08970 CDS
T08878
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
frl
Francisella sp. LA112445
Pathway
frl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
frl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIP56_08970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frl03021
]
FIP56_08970 (rpoC)
03400 DNA repair and recombination proteins [BR:
frl03400
]
FIP56_08970 (rpoC)
Enzymes [BR:
frl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIP56_08970 (rpoC)
Transcription machinery [BR:
frl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIP56_08970 (rpoC)
DNA repair and recombination proteins [BR:
frl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIP56_08970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QIW10819
LinkDB
All DBs
Position
complement(1854210..1858466)
Genome browser
AA seq
1418 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVVRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCERCGVEVEQTKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDEEYAEALENYGYEFEASMGA
EAIRDLLSDTDIESEIEILQEEYAQSKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQES
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGHATTIKQAKRMVELEEAAVWDILEIVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLESRV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFASYEDVSRAYSSGTI
DIHAKIKLRVDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGISVGVDDMTIPDDKEAKVEEAEQEIK
HITEQYQSSLITENERYNNIINIWGKTSDEVGASMMDAISKDTITVNGETKETESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGIVLLEEGTLLDENLVELLDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERQVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGVTVSDIKVKTAGKIKFKNIR
TVTNKEGQEIVISRAGEIIVSDTMGRVREQHKIPMGANVPLASGKTVEIGDIIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKIVDEKG
NELKSISLAVGAVLSVSDDTQLEIGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKEA
AILSPCDGMVRLGNRDTKEKQRIEILDKSGHIIEEILLPKSRHLVVFDGENVVKGDVLAD
GPTDPHDLLQYKGLEAFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVVIDEGDS
KFVKNENIELVRILEENDRLREQGKKEVEFELVLMGITRSSLSTESFLSAASFQETTRVL
TEASIHSQVDQLRGLKENVLIGRLIPTGTGLAVRKESKKIEKIREELGVEDGIAFTDAAA
AFNIEETSVENIKPQETEKDINEDIEESLRNALESLDF
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaattacaatagtaaaaagtttgatattattaaaata
tctttagcatctccagaggttgttcgttcatggtctcatggtgaagttaaaaagccagaa
actattaactatagaacatttaagccagaaagagatggtttattttgtgctaagattttt
ggtcctgtgaaagactacgaatgtttatgtggtaaatataagcgtctaaaacatcgtggt
gtagtttgtgagcgttgcggcgttgaagttgagcaaactaaagtaagaagagaaagaatg
ggacatattgatctagtttgtcctgttgtacatatttggtacttaaagtctcttccttca
agaattggtcttttcttggatatgcctcttaagaatgtagagaaagttctatattttgag
tcgtatattgttactgatccaggaatgacacctttagagaaaaagcaacttcttacagat
gaagagtatgctgaagctctagagaactatggttatgagtttgaagcatctatgggtgct
gaagctattagagatctattatcagatacagatattgaatctgaaatagaaattttacaa
gaagaatatgcacaaagtaaatctacagctaagaaagaaaaagctatcaagagattaaga
cttcttgaaactttccaggcatcaggtaataagcctgagtggatggtaatgacagtatta
ccagttcttccaccagatttaagacctcttgtacctatcgaaggtggtaggtttgcaact
tctgatttaaacgatttatatcgtagagtaattaatagaaacaatagacttaaaaagcta
ttagatcttaatgctccagatatcattgttagaaatgaaaagagaatgcttcaagaatca
gttgatgcgttattagataatggtagacgtggtagagctgtaactggctctaacaagcgt
ccacttaaatcattagctgatatgattaaaggtaagcaaggtcgtttccgtcaaaaccta
ctcggtaagcgtgtggactattctggacgttcagtaattactgtaggtccatctttaaga
ttacacgagtgtggtcttcctaagaaaatggctctagagttatttaaaccatttgtatac
tctaagctaagactaggtggtcatgctactactattaaacaagctaagagaatggttgag
cttgaagaagcggcagtatgggatattctagagatcgttattaatgagcatccagttctt
ctaaaccgtgctcctacactacataggttaggtatccaagcttttgaacctaagctaatt
gaaggtaaagcaatacagctacatcctctagtgtgcgcggcatttaatgctgactttgat
ggtgaccaaatggctgttcacgtacctttaactgttgaatcacagttagagtcgcgtgtg
ttaatgatgtctacaaacaacatcttatcacctgcatctggacaaccaattattactcct
actcaggatatcgtgttaggtttatactatatcactagagaaaaagagggtgctagaggt
gaaggtaaattatttgctagttatgaagatgtaagcagagcttatagttcaggaactatt
gatatacacgctaaaattaaactaagagtagatagacaagtttttgatactaagggtaat
acttataatgagaaaggagttgtaaatactacagttggtagagcacttcttcttaatata
ctacctgaaggtttatctttctctttattaaataaagttttagtgaagaaagaaatttct
aaaattatcaaccaagcattcagagtgctaggtggtaaagctactgtagttttagctgat
aaattaatgtatgcaggttttaaatactcaactctatcaggtatctctgtaggtgttgat
gatatgactattcctgatgataaagaagctaaagtagaagaagctgaacaagaaattaag
catattacagaacagtatcaatcttcattaattacagaaaatgaaagatataacaacatc
atcaatatttggggtaaaacttctgatgaggttggagcttcgatgatggatgctatatct
aaagatacaatcactgtaaatggtgaaacaaaagagacagaatcatttaactcagtttat
atgatggctaaatctggtgctaggggttcttataaccagatgagacagcttgctggtatg
cgtggtctaatggcaaaaccagatggtacgatgatagaaactgcaattacagcaaacttt
agagaaggtctatcagtattacagtactttacatctactcacggtgctcgtaagggtctt
gcagatacagctcttaaaacagctaacgcaggttacctgacacgtagattagttgatgtt
gctcaagacttagttgttattgaagaagattgtggtactgatgatggtttaatgttctca
gctatcgttgaagatggtgaagttaaggttccactagtagagagagccttaggtagaaca
ttagctgctgatgttgtaactgaaaaaggtattgtactattagaagaaggtactttattg
gatgagaatctagttgagctacttgatgataatggtattgatatgatcaaagttagatca
ccaatcacatgtaaaacacgtagaggtttatgtgctaagtgttatggtagagatctagcg
cgtgaaagacaggttaacgttggtgagtctgttggtgtaatcgctgctcaatcaattggt
gagccaggtacgcagttgacaatgagaacgttccatacaggtggtgcggcatctctaggt
gttacagtttctgatatcaaagttaaaacagctggtaagatcaagtttaagaacattaga
acagtaactaacaaagaaggccaagagattgtaatctcgcgtgctggtgaaattattgtt
tctgatactatgggtcgtgtaagggagcaacataaaatccctatgggtgcaaatgttcct
ttagctagcggtaaaactgtagagatcggtgatataattgctacttgggatcctcatgct
cagccattaattacagatgttgctggtaaggtagttcttgaagatgtaatagatggtata
acatctaagcatacttatgatgatctaactggccaacaaactattgagatcacttctata
tctcaaagaacaacatctaagaacttaaaaccagttgttaagattgttgatgaaaaaggt
aatgaacttaagtcaatatctttagcagtaggtgctgtactaagtgtttctgatgatact
cagttagaaattggtgatgttgttgctaagattcctctagaagggtctaagaacaaggat
attacaggtggtcttccgcgtgttgctgaattatttgaggctagacgccctaaagaggct
gctatactttctccatgtgatggtatggtaagacttggtaacagagacactaaagaaaaa
caaagaattgagattttagataagagtggtcatattattgaagaaattttattacctaaa
tctcgtcacttggttgtttttgatggtgaaaatgttgttaaaggtgatgtcttagcagat
ggacctacagatccacatgatctacttcagtataaaggattagaagcttttgctgactat
atattgattgaggctcagtctgtatatcgtatgcaaggtgttgtaattaacgataagcat
attgaaacgatcgtaagacaaatgctaagaaaagctgttgtaattgatgagggtgatagt
aagtttgttaaaaatgaaaatatcgaacttgttagaatcttagaagaaaatgacagatta
cgtgagcaaggtaagaaagaagtagagtttgaacttgtacttatgggtattacaagatct
tctttatctacggagtcattcttatcagctgcgtcgttccaagagacaacaagagtactt
actgaagcatcgatacattctcaagtggatcaattaagaggtcttaaagagaacgttctt
attggtagactaataccaacaggtactggtttggctgtaagaaaagaatctaagaagatt
gagaaaataagagaagaactaggtgttgaagatggtatagcatttactgatgctgcagca
gctttcaatattgaagaaacttctgttgaaaatatcaagcctcaagaaactgagaaagac
atcaatgaagatattgaagagtcattaagaaatgctcttgaatcattagatttctaa
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