Francisella sp. LA112445: FIP56_08975
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Entry
FIP56_08975 CDS
T08878
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
frl
Francisella sp. LA112445
Pathway
frl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
frl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIP56_08975 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frl03021
]
FIP56_08975 (rpoB)
03400 DNA repair and recombination proteins [BR:
frl03400
]
FIP56_08975 (rpoB)
Enzymes [BR:
frl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIP56_08975 (rpoB)
Transcription machinery [BR:
frl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIP56_08975 (rpoB)
DNA repair and recombination proteins [BR:
frl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIP56_08975 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
QIW10820
LinkDB
All DBs
Position
complement(1858526..1862602)
Genome browser
AA seq
1358 aa
AA seq
DB search
MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLNADEAKGRLHSGLELVLKQSF
PVESKNGQYELHYVDYQIGEPSFDETECQVRGATYDAPLNVKLRLVVYNKEALPNEKIVE
DIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGAFSARIIPYR
GSWLDFEFDAKGIVWARIDRKRKFCATVILKALGYTQEEILENFSDSKTITFDSKGFALK
LDDLPSMKGELLKFDIVDDQGKTIVKKNKKLTSRDVKKIKDSGIDSVAIDFDLVSTLRVA
KDIVNEATGEVIAYANDDVTESLLEACVGVGMLELEVIDFITTEKGRYISDTLKYDLTKN
TDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGSDKVSKDI
YTLENSDIVGVLEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE
SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGG
LSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYSRVNDFGFLEAPYRKVVDG
RVTDEIEYLSAIDEDNYVIAQASTELDKDNHFVEDLIQCRSGGEAIFTESSRVQYMDVSA
KQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKADKPLVGTGMEKIVARDSGNCII
ARNAGEIAEVDSNRIVVKVDTDKSKDNKLVDIYSLTKFKRSNKNTCINQRPIVNVGDKVE
AGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTC
VARDTKLGPEEITADIPNVSESGLAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPE
ERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSLRALQIEKEQINKARK
DFDEEFAVIESVVRSSVESDIVGAKVLKAKGLKKGAVLTKEFLEKLPFAKWLEISFEDEK
LNDRVEKAKEYYDEAKIAIDAKFEIKKKSITQSNELSPGVLQTVKVFVAIKKRIQPGDKM
AGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGK
RVEKTLEQTRKAAELRKTLEEVYNSVGNKKVDLESLSDEEVLTLCENLKDGVPIATPVFD
GAREEDIKSLLKIGGFASNGQMKLFDGRTGQAFDRNVTVGYMYMLKLDHLVDDKMHARST
GSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNI
VDGKLTMSVDVPESFNVLRNEVRALGIDMDFDHSSEEE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactcatacgctgagaaaaaaagaattcgtaaagagtttggggttcttcctcat
atcttagatgtaccatatttactttcgattcaaacagagtcttataaaaagttcttaaat
gctgatgaagctaaaggtagacttcactctggtcttgaattagtgctaaagcaatctttt
ccagtagaaagtaaaaatggtcaatatgaacttcattatgttgattaccaaataggtgag
cctagtttcgatgaaactgagtgtcaagtgcgtggtgcaacttacgatgctccgttaaat
gttaaattaaggttagttgtatataataaagaagctcttccaaatgaaaaaatagtagaa
gatattagagaagagtatgtgtacatgggtgacattccattaatgacaacaaacggtaca
tttattatcaatggtactgaaagagttgtggtgtcacagttacatagatcacctggcgtc
ttttttagtaaagatgattcagaagaaggtgcattttcagcacgtattattccgtataga
ggatcttggcttgactttgagtttgatgcaaaaggcatcgtatgggctagaattgataga
aaaagaaaattctgtgctacagtaattttaaaagctcttggatatactcaagaagagata
ttagaaaatttctcagatagtaaaactattacttttgatagtaaaggttttgcccttaag
ttagatgatttacctagtatgaaaggtgaactacttaagtttgacattgtggatgatcaa
ggcaaaacaatagttaagaaaaacaagaaattaacatctagagatgttaagaaaattaaa
gattcaggcatcgactctgttgctatagattttgacttagtaagtactcttagagtagcg
aaagatatcgttaatgaggctactggtgaagttatagcatatgcaaatgatgatgttaca
gagagcttattagaagcatgcgttggtgtgggcatgcttgagctagaagttatcgatttc
ataactactgaaaaaggtagatatatttctgatactctaaagtatgatctaacaaaaaat
actgatgaagctttagttgaaatttataaagtactaagacctggtgatcctccagcagct
gcatcagttaaagcattatttgaaggcttattctttatcgaaagcaggtatagcttatct
gatatcggtagaatgaagctaaatgctagattaggttcagataaagtttctaaagatatt
tatactctagaaaatagtgatatcgttggcgtattagaagagctaattaatattcgtgat
ggtaaaggcaaggttgatgatatcgatcacttaggtaatagacgtgtgcgttctgttggt
gagatggttgaaaaccaatttagaataggtctttaccgtgtagaaaaaggtatccgtgaa
agtatgtctttagtacataaagataagcttatgcctaaagatatcgtaaactctaagccg
attacagctgcgattaaagagttctttacatctggtgcgttatcacagtttatggatcag
gataacccattatcagaagttacgcacaagcgtagaatttctgcattaggtccaggtggt
ttatcacgtgatagagctggttttgaggttcgtgacgttcacgcaactcactatggtaga
ttatgtccaattgagactccagagggtccaaacattggtcttatcaactcattagctagt
tactctagagtaaatgactttggtttcttagaagccccatatagaaaagttgttgatggt
agagttactgatgagatcgaatacttatcagctatcgatgaagataactatgtaattgca
caagcttctacagaacttgataaagataatcactttgttgaagatcttattcagtgtcgt
tcaggtggtgaagcaatatttacagaatctagcagagttcaatatatggatgtttctgct
aaacagatggtttcagcagcagcggcactaatacctttcctagagcacgatgatgctaac
agggtattgatgggtgcgaacatgcaacgtcaagctgtaccaactcttaaagcagataag
cctttagttggtactggtatggagaagattgttgctagagattcaggtaactgtatcata
gctagaaatgctggtgaaattgcggaagtagattcaaatagaatcgtagttaaggtagat
actgataagtctaaagacaataagctagttgatatctatagcctaactaaattcaagcgt
tcaaataaaaatacttgtattaaccaacgtccaatagttaacgttggtgataaggttgaa
gctggtgatattttagcagatggttttgctactgatttcggtgagctatctctaggtcat
aaccttatggttgctttcatgccatggaatggttataactttgaggattcaattttacta
tctgaaagaatagtgaaagatgataagtatacaagtatacatattgaagagtttacttgt
gtagctcgtgatactaagcttggtcctgaagagataactgcagatattcctaacgtaagt
gagtcaggtttagcaaaacttgatgagtcagggattgtacatattggtgctaatgttgaa
gctggtgatattcttgtagctaagatcactcctaaagctgaacaacaactaactccagag
gaaaggttactaagagcaatctttaatgaaaaagcttctaatgttgctgatagttcattg
agaatgccaagtggtacttctggtacagttatcaatgttcaagtttttgaaaatgataaa
ggtggtaagagcttaagagcacttcagattgaaaaagagcaaataaacaaggctcgtaaa
gactttgatgaagagtttgctgtaattgaatctgtagttagatcttcagtagaaagtgat
attgttggtgctaaagttctaaaagcaaaaggtcttaagaaaggtgctgttctaactaag
gagtttttagagaaacttccgtttgctaaatggttagaaatatcttttgaagatgagaag
cttaatgatagagtagaaaaagctaaagagtattatgatgaagcaaaaatagctattgat
gctaaatttgagattaagaaaaaatctattactcaaagcaatgaactatctccaggtgta
cttcaaacagttaaagtttttgttgctatcaagaaacgtattcagccaggtgataaaatg
gctggtcgtcacggtaacaaaggtgtggtatcacgtgtactacctgttgaagatatgccg
tatatggaagatgggactcctgtagatgtttgtttgaaccctctaggtattccatcgcgt
atgaatatcggtcagattcttgaggctcacttaggtttggcttcatatggtcttggtaag
agagtagagaaaacattagagcaaactagaaaagcagctgagttaagaaaaacccttgaa
gaggtttataatagcgttggtaataaaaaagttgacctagaatctttaagtgatgaagaa
gttttaactctttgtgaaaacttaaaagatggtgtaccaattgcaactcctgtatttgat
ggtgcaagagaagaagatattaaatctctattaaaaataggtggttttgcaagtaatggt
cagatgaaactttttgatggccgtacaggtcaagcatttgatagaaatgtaacagttggt
tatatgtatatgttgaagcttgatcacttagtagatgataagatgcatgctagatcgact
ggatcgtatagtttagttacacaacagcctctaggtggtaaagcacagtttggtggccaa
agattcggtgagatggaggtttgggcattacaagcatatggtgctgcttatacgctaaga
gagatgttaacagttaaatcagatgatatagctggtagatctaaaatgtataagaatata
gttgatggtaagttgactatgagtgttgatgttccagaatcattcaatgttctaagaaat
gaagttagagcactgggtatagatatggattttgaccattcatctgaggaagaataa
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integrated database retrieval system
