Frigoribacterium sp. NBH87: F1C15_02780
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Entry
F1C15_02780 CDS
T06748
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
frn
Frigoribacterium sp. NBH87
Pathway
frn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C15_02780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frn03019
]
F1C15_02780
03400 DNA repair and recombination proteins [BR:
frn03400
]
F1C15_02780
Enzymes [BR:
frn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1C15_02780
Messenger RNA biogenesis [BR:
frn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C15_02780
DNA repair and recombination proteins [BR:
frn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F1C15_02780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
HVO_A0261_N
HEM4
Motif
Other DBs
NCBI-ProteinID:
QNE42889
LinkDB
All DBs
Position
590466..592601
Genome browser
AA seq
711 aa
AA seq
DB search
MTDTAAPAVTDVDAEALELLRRLTGRDDAVFHDGQLEAIRALVADRRRALVVQRTGWGKS
AVYFIATLLLRRRGTGPALLVSPLLALMRDQVAAAARAGVRAVALNSANAHEWADVQQAL
LADEVDVLLVSPERLNNPRFRDEQLPLLVDRLGMLVVDEAHCISDWGHDFRPDYRRLAEL
IRTLPAGVPVLATTATANERVVADVEEQLTEGPETSVLTIRGSLARASLRLGVLDLPTSR
DRLGWLLAHLGDLAGSGIIYTLTISAADDTARLLREAGHDVRSYTGRTDPEEREQLEHRL
KTNDLKALVATSALGMGFDKPDLGFVVHLGAPSSPVAYYQQIGRAGRATDNADVLLLPGR
EDREIWQYFATASMPSEARASAVLAELGETPLSTPALEARVDIKRTPLELLLKVLDVDGA
VHRVQGGWVSTGRPWVYDRERYDRIATARLAEQESMIRYEEGATCRMQMLQLDLDDPAAV
PCGRCDVCAGPWYPSDVTSDAAASAASSLDRVGVEVEPRAQWPTGADRAGVPAKGKIAPD
ERVEQGRALARLTDLGWGTTLREVFAPSTPDQPVTRALVDGCVRVLADWGWAERPVGIVV
MPSQGHPQLVASLGEALGHVGRLPVLGQLTPTRQRSSDAPRGGGNSVYRLADVWGSVEVG
PELAAALAATPGPVLLVDDLVDSRWTVTVAGRELRRAGASAVLPFALGVVA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccgccgcccccgccgtgaccgacgtcgacgccgaggccctcgagctgctg
cgacgcctgaccgggcgtgacgacgccgtcttccacgacggccagctcgaggcgatccgc
gccctcgtcgccgaccgccgacgcgcgctcgtcgtgcagcgcaccggctggggcaagtcc
gcggtctacttcatcgccaccctgctgctgcgccgtcgcggcacggggcccgccctgctc
gtctcgccgctgctcgcgctgatgcgcgaccaggtggccgcggccgcccgggccggcgtg
cgggcggtggccctcaactcggcgaacgcccacgagtgggccgacgtgcagcaggcgctg
ctcgccgacgaggtcgacgtgctgctcgtgtcgccggagcgcctcaacaacccgaggttc
cgcgacgagcagctgccgctgctggtcgaccggctcggcatgctcgtcgtcgacgaggcg
cactgcatcagcgactgggggcacgacttccgccccgactaccggcgcctcgccgagctc
atccgcacgctgccggccggcgtgcccgtcctcgccacgacggccaccgcgaacgagcgc
gtcgtggccgacgtcgaggagcagctgaccgaggggccggagacctcggtcctgacgatc
cgtggctcgctggcccgcgcctccctgcggctgggggtgctcgacctgcccacctcgcgc
gaccggctcggctggctgctcgcccacctgggcgacctcgcgggcagcggcatcatctac
acgctgaccatctcggcggccgacgacaccgcccggctgctgcgcgaggccggccacgac
gtccgctcgtacaccggccgcaccgacccggaagagcgcgagcagctcgagcatcgcctc
aagaccaacgacctcaaggcgctcgtcgcgacgagcgcgctcggcatgggcttcgacaag
cccgacctcggcttcgtggtgcacctcggcgcgccgtcgtcgccggtcgcctactaccag
cagatcggccgcgccgggcgcgcgaccgacaacgccgacgtgctgctgctgcccgggcgc
gaggaccgcgagatctggcagtacttcgcgacggcgtcgatgccctccgaggcgcgcgcg
agcgccgtgctcgctgagctgggcgagacgccgctctcgacgccggcgctggaggcgcgg
gtcgacatcaagcgcaccccgctcgagctgctgctcaaggtgctcgacgtcgacggcgcc
gtgcaccgcgtgcagggcggctgggtctcgaccgggcggccgtgggtctacgaccgcgag
cggtacgaccggatcgcgaccgcccggctcgccgagcaggagtcgatgatccgctacgag
gagggcgccacctgccgcatgcagatgctccagctcgacctcgacgaccccgccgcggtg
ccgtgcggccggtgcgacgtctgtgcgggcccctggtacccgagcgacgtgacgagcgac
gcggccgcgtcggccgccagctcgctcgaccgcgtgggcgtcgaggtcgagccgcgggcg
cagtggcccaccggcgccgaccgggccggcgtgcccgccaagggcaagatcgcgcccgac
gagcgcgtcgagcaggggcgggccctcgcgcgcctcaccgacctcggctggggcacgacg
ctccgggaggtgttcgcgccgtcgacgcccgaccagcccgtcacgcgggcgctcgtcgac
ggctgcgtccgggtgctggccgactggggctgggccgagcggcccgtcggcatcgtcgtg
atgccgtcgcaggggcacccgcagctcgtggcctcgctgggcgaggccctcggccacgtc
gggcggctgcccgtgctcggccagctgacgccgacccgccagcgctcgtccgacgccccg
cgcggcggcggcaacagcgtctaccgcctcgccgacgtgtgggggtcggtggaggtcggc
cccgagctcgccgcggccctggcggccacgcccgggcccgtgctgctcgtcgacgacctc
gtcgacagccggtggacggtcaccgtcgcggggcgcgagctccgtcgggcgggtgcctcc
gcggtgctcccgttcgcgctcggggtcgtcgcgtag
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