Frigoribacterium sp. NBH87: F1C15_02915
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Entry
F1C15_02915 CDS
T06748
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
frn
Frigoribacterium sp. NBH87
Pathway
frn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C15_02915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frn03019
]
F1C15_02915
03009 Ribosome biogenesis [BR:
frn03009
]
F1C15_02915
Enzymes [BR:
frn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1C15_02915
Messenger RNA biogenesis [BR:
frn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C15_02915
Ribosome biogenesis [BR:
frn03009
]
Prokaryotic type
rRNA helicases
F1C15_02915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
adh_short
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QNE42909
UniProt:
A0A7G6YWP4
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All DBs
Position
623569..625371
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AA seq
600 aa
AA seq
DB search
MSPTETRDEIDADTPDSAPTFSDLGLSDAVLKAVKEIGYETPSAIQAATIPTLLSGRDVV
GLAQTGTGKTAAFALPILSRLDVSAKKPQALVLSPTRELALQVCEAFEQFASGMRGVHVL
PVYGGQAYGVQLSALRRGVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPDDKQVALFSATMPPQIRRISKQYLNDAEEITVKQKTTTSANTTQRYLMV
SYPQKVDALTRILEVENFEGMIIFVRTKNETETLAEKLRARGYSAAAISGDVAQAQRERT
VNQLKSGKLDILVATDVAARGLDVDRISHVVNYDLPIDTESYVHRIGRTGRAGRSGAAIS
FVTPRERRLLGAIEKATRQPLTQMQLPTLEDVNVTRLARFDDQITEALAQESRIAAFRDI
IGHYVEHHDVPEADVAAALAVVAQGETPLLLDPKDERPARRERDDRPARDDRGGDDRGGR
FDRDDRGSRPERDRGPRTSKPMTAYRIEVGRRQRVEPRQIVGALANEGGLSRDDFGAIQI
RPDFSVVELASDVSKEMLDRLVETRISGVLIEIKPDRRGGGSGAPRRDDRDERPRKPRHS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagccccaccgaaacgcgcgacgagatcgacgccgacacccccgactctgcgccgacc
ttctccgacctggggctcagcgatgccgtcctcaaggccgtgaaggagatcggctacgag
accccctccgccatccaggcggccaccatccccaccctcctgtcgggtcgcgacgtcgtc
gggctcgcccagacgggcaccggcaagacggccgccttcgcgctgccgatcctcagccgc
ctcgacgtctcggccaagaagccgcaggcgctcgtgctctcccccacccgtgagctcgcg
ctccaggtgtgcgaggcgttcgagcagttcgcctccggcatgcgcggcgtccacgtgctc
cccgtctacggcggccaggcctacggcgtccagctgagcgcgctccgtcgcggcgtccac
gtcgtcgtcggcacgcccggccgcatcatggaccacctcgcgaagggcacgctcgacctc
tccgagctcaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgcg
gaggacgtcgagacgatcctcgccgacacccccgacgacaagcaggtcgcgctcttctcc
gcgacgatgccgccccagatccgtcgcatctcgaagcagtacctcaacgacgccgaagag
atcacggtcaagcagaagaccacgacctcggcgaacaccacccagcgctacctgatggtg
tcgtacccgcagaaggtcgacgccctcacgcgcatcctcgaggtcgagaacttcgagggc
atgatcatcttcgtccgcacgaagaacgagaccgagaccctcgccgagaagctgcgggcc
cgcggctactccgccgccgccatcagcggcgacgtggcgcaggcccagcgcgagcgcacg
gtcaaccagctcaagagcggcaagctcgacatcctcgtcgcgaccgacgtcgcggcccgt
ggtctcgacgtcgaccgcatcagccacgtcgtcaactacgacctgccgatcgacaccgag
tcgtacgtgcaccgcatcggccgcaccggccgtgccgggcgcagcggcgcggcgatcagc
ttcgtcacgccccgcgagcgtcgcctgctcggcgcgatcgagaaggccacgcgtcagccg
ctgacgcagatgcagctgcccacgctggaggacgtcaacgtcacgcgtctcgcgcgcttc
gacgaccagatcacggaggcgctggcccaggagagccggatcgccgccttccgcgacatc
atcggccactacgtcgagcaccacgacgtgccggaggccgacgtggccgccgccctcgcc
gtggtcgcccagggcgagacgccgctgctgctcgacccgaaagacgagcgaccggcccgg
cgcgagcgtgacgaccgtcccgcccgtgacgaccgcggcggcgacgaccggggcggccgc
ttcgaccgcgacgaccgtggctcgcgccccgagcgcgaccgcggcccccgcacgtcgaag
ccgatgacggcctaccgcatcgaggtcggtcgtcgtcagcgcgtcgagccccgccagatc
gtcggcgccctcgccaacgagggcggcctcagccgtgacgacttcggcgcgatccagatc
cgccccgacttctccgtcgtcgagctcgcctcggacgtcagcaaggagatgctcgaccgt
ctcgtcgagacccgcatcagcggcgtgctcatcgagatcaagcccgaccgccgtggcggc
ggctccggtgcgccccgtcgcgacgaccgcgacgagcgcccccgcaagccgcgccactcg
tag
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