Frigoribacterium sp. NBH87: F1C15_06730
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Entry
F1C15_06730 CDS
T06748
Name
(GenBank) type IV secretion protein Rhs
Organism
frn
Frigoribacterium sp. NBH87
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
DUF6531
Motif
Other DBs
NCBI-ProteinID:
QNE43542
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All DBs
Position
1463786..1469221
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AA seq
1811 aa
AA seq
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MTDPYGNEPLKFSFWAADNLKSAFTNAASDVEGQTASRASAVETGKQEFRGLFADLFAEN
ATTAARGAEGLVDKLREAADFVDQIMESAKRENARRKEARDYTQRQGERNVVDHVVDAFT
GGEKAPTTKKEDQLVLRASYTPPPREVPTGGGASGPTSSALPANLRSFASSTTTLDGELS
SRPGTLSSALDTFSTQCDWGEFSADGLVRALSAWLDDNANDAAWATTVADKFAQAGGEGS
VSTLSNAAIAASLQAAGIDLGRDDLVIEPPQAYGGAPTNGFSVDPVNTTTGNFLETEVDL
PFAGASTTLSVSRTYNSLDGTVGLFGPGWSSVLETRLELDDEGATFTMGDGRQVVFPRLG
DGWDRAVGENWWLASEGSMLVVRDNAGARWDFTPSGTWLGSAGGAGTAVQVARGSDDLPA
RLTHARGRLVEVEYVDGRVAVLRSSDGRRVEHSYDEAGRLVAATTEAGTRRYGWDDAGLI
TTVTSASGVVEVVNSYDDRRRVVEQLTPHGRAVRFAYLRGRVTVVSDHDGSRSDTWISDA
RGRLVGLLDSSDQRQSMSYDAHGNLVSVIERDGSVTVHGYDERGRRVRTVTPAGADLTWG
WDDHDRVTTVVTESGAVVQYEYADDADRDPSTIVDPEGGRTELVWRDGLLQQATDPTGVV
VRCRYDEHGDLVETENALGDVARLERDQAGRPVAAVSPSGARTTFRYDAAGMLVSRRDPD
GATWRFENGPGGRRTAVVDPLGARTELSYAANGELESTTDALGRVVTRTFDDQAALARVV
LADGSVQSFTYDALSRLRTVTDPTGGEWTHEHDLVGALTAVVDPTGVRQEARRETADGAA
TLRDAFSTTTLRFDEFGRPVSQTSADGSAELTTYDRCGRPVELVDGEGGLTRLERDAAGR
VVAVVSPGGARTSYEYDACGRPAASTDPLGARTTLTHDADSRVVARTLPTGEVERIAYDA
VGRVVSRHVPGVGTARLGYDAAGRLTSSQDTRHGRRRFRYDAVGQLVEAVDGLDGVTRYE
HDERGRVVSVTDPLGGVTRRAFDAAGRLVSSTDPLGRTTTTGWDAAGRRVLRRDPDGRET
RWSHDAAGRPSTITVEGRETAALHLDPATRTLRVVDRSRGEGVDVEHELVFDRRGALVRR
ARGSEAITWEHDADGRLAARVDPDGTRTEYRRDAAGRVVSVSHAGVESTLSHDASGRLVG
SVAGDVAQTWRYDDGELVEHVTTRLDGVRSTLVERDDDGRIRRVEGVDGAVEHEYEYDAA
CQLRSVRASGGALTTWEYDAAGRVVSESADGAVSRSTYDAAGQLVSRELPDGRRLDYVHD
GLGRRVREIADDGSYVEYAWSDLGSLASVVDRDPDGAVVRRTDLWVDALGELAAIDGVET
WWDTASAVPALVSVGGASVFTLPGGATQVGDDWLGPAWRGVRATDAGDPWGSADASSGLA
GLELPGGASLTATGGLQIGGLEWLGARVYDPSARGFLSVDPLAPVTGAAWSGNPYSYAGN
DPMHAVDPLGLRPATDADMKAFATANQGAFAAAGTWWDENWEYVAAGAAIVGGVALMCTG
VGGPAGIALMAASGALLSGGISVASQKATTGEVDWAKAGVDTLIGGVMGGAGAAAGAWAT
GSQAARSALAVSNGMNRVGTAVGGAGQRALATAGQAIMSETGKKVVANGVVGAAGNFGTY
AATTDEWHWDEALGAAGNGFVSGGTGAYGGRFTGELTGAAGFLANGAVGATSSLLGGGAE
AIISNEGYQPADLLWNAGSGFVLGQMPEAEGTPGTDPGWGIHFGNAGAGQVASWGADSIH
EVGVGIGILPR
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatccgtacggcaacgaaccgctgaagttcagcttctgggcggccgacaacctg
aagtcggcgttcacgaacgcggcgtccgacgtcgaggggcagaccgcctcgcgcgcctcc
gccgtcgagaccggcaagcaggagttccgcgggctcttcgccgacctcttcgccgagaac
gcgaccacggcggcgaggggcgccgagggcctggtcgacaagctccgcgaagctgccgac
ttcgtcgaccagatcatggagtcggcgaagcgagagaacgcccgccgcaaggaggcgcgc
gactacacgcagcgccagggcgagcgcaacgtggtcgaccacgtcgtcgacgccttcacc
ggcggcgagaaggccccgaccacgaagaaggaggaccagctcgtcctccgggcgagctac
acgccgccgccccgcgaggtgcccacgggcgggggcgcgtccggcccgacgtcgtcggcc
ctgccggcgaacctgcggtcgttcgcctcctcgacgacgacgctcgacggcgagctctcg
tcgcgccccggcaccctgtcgtccgccctcgacaccttctcgacgcagtgcgactggggc
gagttctccgccgacgggctcgtgcgcgccctctccgcctggctcgacgacaacgcgaac
gacgccgcctgggccaccaccgtcgccgacaagttcgcgcaggccggcggcgaagggtcg
gtgtcgaccctctcgaacgccgcgatcgccgcctcgctgcaggccgccggcatcgacctc
ggccgcgacgacctcgtcatcgagccaccgcaggcctacggcggagccccgacgaacggc
ttctcggtcgaccccgtcaacaccaccaccggcaacttcctcgagaccgaggtcgacctg
ccgttcgcgggcgccagcacgaccctgagcgtctcccgcacctacaacagcctcgacggc
accgtcggcctcttcgggccgggctggtcgtccgtcctcgagacgcgcctggagctcgac
gacgagggcgcgaccttcacgatgggcgacggccgtcaggtcgtcttcccgcgcctcggc
gacggctgggaccgcgccgtcggcgagaactggtggctcgcctccgagggcagcatgctg
gtcgtccgcgacaacgccggcgcccgctgggacttcaccccctcgggcacctggctgggg
tccgccggaggcgcgggcacggccgtgcaggtcgctcgcggctccgacgacctcccggcc
cgcctcacgcacgcccgcggccgcttggtcgaggtcgagtacgtcgacggccgcgtcgcc
gtgctgcgctcgtcggacgggcgccgggtcgagcactcgtacgacgaggccggacggctg
gtggccgcgaccaccgaggccggcacccggcgctacggctgggacgacgcggggctgatc
acgacggtgaccagcgcctccggggttgtcgaggtggtcaactcgtacgacgaccgccga
cgcgtcgtcgagcagctcacgccccacggccgcgccgtgcgcttcgcctacctgcgcggc
cgcgtcacggtcgtctccgaccacgacggctcgcgctccgacacctggatctccgacgcc
cgcggccgtctcgtgggcctgctcgacagctccgaccagcgccagtcgatgagctacgac
gcccacgggaacctcgtctcggtgatcgagcgcgacggcagcgtgaccgtgcacgggtac
gacgagcgcggccgccgcgtgcgcaccgtcacgcccgccggcgccgacctcacctggggc
tgggacgaccacgaccgcgtcaccaccgtcgtcaccgagtcgggcgccgtcgtgcagtac
gagtacgccgacgacgccgatcgggacccctcgacgatcgtcgaccccgagggcgggcgc
accgagctggtctggcgcgacggcctgctgcagcaggccaccgacccgaccggcgtcgtg
gtgcgctgccgctacgacgagcacggcgacctcgtcgagaccgagaacgccctcggcgac
gtcgcgcgcctcgagcgcgaccaggccgggcggcccgtcgccgcggtgagcccgagcggc
gcccgcacgaccttccgctacgacgccgcgggcatgctcgtctcgcgccgcgaccccgac
ggcgccacctggcgcttcgagaacggccccggcggtcgccgcaccgccgtcgtggacccg
ctgggcgcccgcaccgagctgagctacgccgcgaacggcgagctcgagagcaccaccgac
gccctcggccgcgtcgtcacgcgcacgttcgacgaccaggccgcgctggcccgcgtcgtc
ctcgccgacggcagcgtgcagtcgttcacctacgacgccttgtctcggctgcgcacggtc
accgaccccacggggggcgagtggacccacgagcacgacctcgtgggcgcgctcaccgcc
gtcgtcgacccgacgggggtcaggcaggaggcgcggcgcgagaccgccgacggcgcggct
accctgcgcgacgcgttcagcaccacgaccctgcgcttcgacgagttcgggcgcccggtc
tcgcagacctccgccgacggctccgccgagctgacgacctacgaccgctgcggccgcccg
gtcgagctcgtcgacggcgagggcggcctgacgcgcctcgagcgcgacgcggccggccgc
gtcgtcgcggtcgtctcccccggcggcgcccgcacctcgtacgagtacgacgcgtgcgga
cgaccggccgccagcaccgacccgctcggcgcccgcacgacgctgacccacgacgccgac
tcccgggtcgtggcccgcaccctgcccaccggcgaggtcgagcgcatcgcctacgacgcc
gtcgggcgcgtcgtctcgcggcacgtgcccggcgtgggcaccgcccgcctcggctacgac
gccgccggacggctgacctccagccaggacacccgccacggccggcgccgcttccgctac
gacgccgtcgggcagctcgtcgaggccgtcgacggcctcgacggcgtgacccgctacgag
cacgacgagcggggccgcgtggtctccgtcaccgacccgctgggcggcgtcacccgccgc
gcgttcgacgccgcaggccgcctcgtgagctcgaccgacccgctcggccgcacgacgacc
accgggtgggacgccgcgggccgacgcgtgctgcgtcgcgaccccgacggccgcgagacc
cggtggagccacgacgccgccggccgcccctccacgatcacggtcgagggccgcgagacc
gcggccctccacctcgaccccgccacgcgcaccctgcgcgtggtcgaccgctcgcggggc
gagggcgtcgacgtcgagcacgagctggtcttcgaccggcgcggggcgctcgtccgccgc
gcgcggggctccgaggcgatcacgtgggagcacgacgccgacggccgcctcgccgcccgc
gtcgaccccgacggcacccgcaccgagtaccgccgcgacgccgccggccgggtcgtctcc
gtgtcgcacgccggggtcgagtcgaccctgtcgcacgacgcctcgggacgcctcgtcggg
tcggtcgcgggcgacgtggcgcagacctggcgctacgacgacggcgagctcgtcgagcac
gtcacgacccgcctcgacggcgtgcggagcacgctcgtcgagcgcgacgacgacggtcgc
atccggcgcgtcgagggcgtcgacggcgccgtcgagcatgagtacgagtacgacgcggcc
tgccagctgcgctcggtccgcgcctccggaggtgccctcaccacctgggagtacgacgcg
gccggacgagtcgtgagcgagtcggccgacggtgccgtgtcgcgctcgacctacgacgcg
gcgggccagctcgtctcgcgcgagctgcccgacgggcgccgtctcgactacgtgcacgac
ggcctcggccgccgcgtgcgggagatcgccgacgacggctcgtacgtcgagtacgcctgg
tccgacctcgggtcgctggcctcggtcgtcgaccgcgaccccgacggcgcggtcgtgcgc
cgcaccgacctctgggtcgatgcgctgggcgagctcgccgcgatcgacggcgtcgagacc
tggtgggacaccgccagcgccgtccccgccctcgtctccgtcggaggcgcgtcggtgttc
accctgccgggaggcgcgactcaggtcggcgacgactggctcggcccggcctggcgcggc
gtgcgggcgaccgacgcgggcgacccctggggctcggccgacgcctcctcggggctggcg
ggcctggagctgcccggaggcgcgtcgctgaccgccacgggcgggctgcagatcggcggc
ctcgagtggctcggcgcgcgggtctacgacccgtctgcccgcgggttcctctccgtcgac
ccgctcgcacccgtcacgggcgcggcgtggtcgggcaacccgtactcgtacgccggcaac
gacccgatgcacgccgtcgacccgctcgggctccggcccgcgaccgacgccgacatgaag
gcgttcgcgaccgcgaaccagggcgccttcgccgccgcgggcacgtggtgggacgagaac
tgggagtacgtcgctgcgggcgccgcgatcgtcggcggcgtcgcgctcatgtgcaccggc
gtcggcgggcccgccggcatcgccctcatggcggcctcgggagccctcctctcgggcggc
atctcggtggcgtcgcagaaggccacgaccggcgaggtcgactgggccaaggccggcgtg
gacaccctgatcggcggggtcatgggaggcgcgggcgccgcggccggcgcctgggcgacc
ggcagccaggcagcccggtcggccctggccgtgtcgaacggcatgaaccgcgtcggcacc
gccgtcggcggcgcggggcagcgtgccctcgccacagccggacaggcgatcatgtcggag
accggcaagaaggtggtcgcgaacggagtcgtcggtgccgcaggcaacttcggcacctac
gcggcgaccacggacgagtggcactgggacgaggctctcggggccgccggcaacggcttc
gtcagcggcggcacgggagcgtacggcggccgcttcaccggcgagctcaccggagcggcc
gggttcctggcgaacggtgccgtcggcgccaccagcagcctgctcggcggaggggccgaa
gccatcatcagcaacgagggctaccagccggccgacctcctctggaacgcggggagcggc
ttcgtcctggggcagatgccggaggcggagggcaccccgggcaccgaccccggctggggc
atccacttcggcaacgccggtgccgggcaggtcgccagctggggtgcggactcgatccac
gaggtcggcgtcggcattggtatcttgccacgatga
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