Frigoribacterium sp. NBH87: F1C15_07065
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Entry
F1C15_07065 CDS
T06748
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
frn
Frigoribacterium sp. NBH87
Pathway
frn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C15_07065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frn03019
]
F1C15_07065
03400 DNA repair and recombination proteins [BR:
frn03400
]
F1C15_07065
Enzymes [BR:
frn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1C15_07065
Messenger RNA biogenesis [BR:
frn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C15_07065
DNA repair and recombination proteins [BR:
frn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F1C15_07065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
PcrA_UvrD_tudor
Dimerisation
DUF7343
Fe_dep_repress
MarR_2
Cas3-like_C_2
TrmB
Motif
Other DBs
NCBI-ProteinID:
QNE43594
UniProt:
A0A7G6YYM9
LinkDB
All DBs
Position
1538567..1540258
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AA seq
563 aa
AA seq
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MSRTAKKPARTAPDAAAIAEIAARLFEWDELRPAQAEAITAVLSGRDTFGIMPTGSGKSA
IYQVAGALLDGPTVVVSPLIALQADQVAGLVGHPDAPPAADINSGHSDAENDESWRRIEA
GEITYVFLAPEQLARDETVERLSRAGVALFVVDEAHCVSSWGHDFRPDYLHLGEVVEALG
RPPVLALTATGSGPVRDEVIERLRLRDPLVISRGFDRPNLSLSVVRHEDDAEKRRAVVEQ
VAELVTPGIVYVATRSESERYADEIGERCPDRTVEAYHAGLRSAERGALHERFHAGEIDV
VVATSAFGMGIDKPDVRFVVHADVPESLDEYYQEIGRAGRDGEPADATLHYRPEDLGLRS
FFASGLPSRAELRSVYEAVRASSGPVRRTTIAEATDLKPRQVSRLVDLLLEAGTVREEKE
GYTATSGVDAETAAERARETAEARDRVEKSRIAMMRSYAEGRGCRRRFLLGYFGEEAPER
CGNCDDCRAAEEAPELPAAEESRVGSDAPAPLFDADTRVTHPAWGEGTVMSTEDDRLTVF
FESEGYKVLAVEAVVEHDLLKAV
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcaccgcgaagaagcccgcccgcaccgcccccgacgccgccgcgatcgcggag
atcgccgcccgcctgttcgagtgggacgagctgcgccccgcccaggccgaagccatcacg
gcggtgctctcgggccgcgacacgttcggcatcatgcccacgggctcgggcaagagcgcg
atctaccaggtcgccggcgcgctgctcgacggcccgaccgtcgtcgtctcacccctcatc
gcgctgcaggccgaccaggtcgccgggctcgtgggccacccggacgctcccccggccgcc
gacatcaactccgggcactccgacgcggagaacgacgagagctggcgtcgcatcgaggcg
ggcgagatcacctacgtcttcctcgcgccggagcagctcgcccgcgacgagacggtcgag
cgcctgtcgcgcgcgggcgtcgccctcttcgtcgtcgacgaggcgcattgcgtgtcgtcg
tggggccacgacttccgccccgactaccttcacctcggcgaggtcgtcgaggccctgggc
cgcccgccggtgctcgcgctcaccgcgaccggctcgggccccgtgcgcgacgaggtgatc
gagcgcctgcgcctccgcgacccgctcgtcatcagccgcggcttcgaccgccccaacctg
tcgctctcggtcgtgcgccacgaggacgacgccgagaagcgccgtgccgtcgtcgagcag
gtcgcggagctcgtgacccccggcatcgtctacgtcgcgacccgctccgagagcgagcgc
tacgccgacgagatcggcgagcgctgccccgaccgcaccgtcgaggcgtaccacgcgggc
ctccgctcggccgagcgcggggccctgcacgagcgcttccacgccggcgagatcgacgtc
gtcgtggcgacgagcgccttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgtg
cacgccgacgtgcccgagtcgctcgacgagtactaccaggagatcgggcgggccgggcgt
gacggtgagcccgccgacgcgacgctgcactaccggccggaggacctggggctgcggtcc
ttcttcgcgtcggggctgccgtcccgtgccgagctgcggtcggtgtacgaggcggtccgc
gcctcctcggggccggtgcggcgcacgactatcgccgaggcgaccgatctcaagccgcgg
caggtgtcgcgcctggtcgacctgctgctcgaggcgggcaccgtgcgggaggagaaggag
gggtacaccgcgacctccggcgtcgacgccgagacggccgccgagcgggcgagggagacc
gcggaggcgcgtgaccgggtcgagaagtcgcgcatcgcgatgatgcgcagctacgccgag
ggccggggctgccgccgacgcttcctgctcggctacttcggcgaggaggcgcccgagcgc
tgcggcaactgcgacgactgccgcgcggccgaggaggctcccgagctgccggccgccgag
gagtcgcgggtcgggtcggatgctccggccccgctcttcgacgccgacacccgcgtcacg
caccccgcctggggcgagggcacggtcatgagcacggaggacgaccggctgacggtcttc
ttcgagagcgagggctacaaggtcctcgccgtcgaggccgtcgtcgagcacgacctgctc
aaggccgtctga
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