Frigoribacterium sp. NBH87: F1C15_07605
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Entry
F1C15_07605 CDS
T06748
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
frn
Frigoribacterium sp. NBH87
Pathway
frn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
frn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F1C15_07605 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frn03021
]
F1C15_07605 (rpoB)
03400 DNA repair and recombination proteins [BR:
frn03400
]
F1C15_07605 (rpoB)
Enzymes [BR:
frn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F1C15_07605 (rpoB)
Transcription machinery [BR:
frn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F1C15_07605 (rpoB)
DNA repair and recombination proteins [BR:
frn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F1C15_07605 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QNE43689
LinkDB
All DBs
Position
complement(1648592..1652083)
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAANTANTNSPKNGRGASRLSFAKITDTLTVPDLLALQTESFDWLVGNDIWKQRLAEAT
EQGRTDLALHSGLEEIFEEISPIEDLGETMQLSFTAPELEDPKYSIDECKERGKTYAAPL
YVNAEFMNHLTGEIKTQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFERASDK
TSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEITEKFK
GFASIEATLEKDAILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGR
YKINRKLGIDAPLGDSVLTVDDIVATIKYLVSLHAEEKTIDGTRDGNAVELRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRRVEAGHVTATIDYLTASEEDDYVVAQANAPLTDGF
DFVDDKVLVRKKGGEVELVAKDEVDYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLVRSESPLVGTGMEGYTAIDAGDVVTADAAGVVTEVSADVVVVQLDEGGTQEYYL
RKFDRSNQGASYNHRVIVDAGQRIEVGEVIADGPATENGELALGKNLLVAFMPWEGYNYE
DAMILSQNLIKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPDLLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTVIGVKV
FDSQDGDDELGSGVNQRVVVFIAQKRKITAGDKLAGRHGNKGVISTILPVEDMPFLEDGT
PVDIILNPLGVPGRMNFGQVLEIHLGWIAAQGWNVEGVQEWAKNLPPEALSAAPGTKVAT
PVFDGAAEREIEGLLDSTLPTRDGDRLIGSSGKARLFDGRSGEPFPNPISVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD
DILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGQTVSLRDTDDEV
FRAAEELGINISSRFESSNVDEI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgaacaccgcaaacaccaactcacccaagaacggccgtggcgcatcgcgc
ctctcgttcgccaagatcaccgacacgctgacggtccccgacctcctggcgctccagacc
gagagcttcgactggctcgtcggcaacgacatctggaagcagcgcctcgccgaggccacc
gagcagggtcgcaccgacctcgccctccactccggcctggaggagatcttcgaggagatc
tccccgatcgaggacctcggcgagacgatgcagctgtcgttcaccgcgcccgagctcgaa
gaccccaagtactcgatcgacgagtgcaaggagcgcggcaagacctacgccgcccccctc
tacgtcaacgccgagttcatgaaccacctcacgggtgagatcaagacgcagaccgtgttc
atgggcgacttcccgctcatgaccgagcgcggcacgttcatcatcaacggcaccgagcgc
gtcgtcgtgtcgcagctggtccgcagccccggcgtctacttcgagcgcgcctccgacaag
acctccgacaaggacatctactcggcccgcgtcatcccgagccgcggtgcctggctcgag
ttcgagatcgacaagcgcgaccaggtcggcgtccgcatcgaccgcaagcgcaagcagagc
gtcaccgtcttcctcaaggccctcggcctgacgagcgaagagatcacggagaagttcaag
ggcttcgcgtccatcgaggccaccctcgagaaggacgccatcctcacgaaggaagaggcc
ctcaaggacatctaccgcaagctccgtcccggcgagcaggtcgcggccgaggccgcgcgt
gcgctcctcgacaacttctacttcaacccgaagcgctacgacctggcgaaggtgggtcgc
tacaagatcaaccgcaagctcggcatcgacgcgcccctcggcgactcggtcctgaccgtc
gacgacatcgtcgcgacgatcaagtacctcgtctcgctgcacgccgaggagaagaccatc
gacggcacgcgcgacggcaacgccgtcgagctccgcctcgacgtcgacgacatcgaccac
ttcggcaaccgtcgcatccgcgcggtcggcgagctgatccagaaccaggtccgcaccggt
ctctcccgcatggagcgcgtcgtccgcgagcgcatgaccactcaagacatcgaagcgatc
accccgcagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcggt
acctcgcagctgtcgcagttcatggaccagaacaacccgctctcgggcctgacgcacaag
cgtcggctctcggccctcgggccgggcggtctctcccgtgagcgcgccggcgtcgaggtg
cgagacgtgcacccctcgcactacggccgcatgtgcccgatcgagaccccggaaggcccg
aacatcggcctgatcggctcgctcgcctcgttcgcgcgcatcaactcgttcggcttcatc
gagaccccctaccgccgggtcgaggccggtcacgtcaccgcgacgatcgactacctcacc
gcgtcggaggaggacgactacgtcgtcgcccaggcgaacgcccccctcaccgacggcttc
gacttcgtcgacgacaaggtgctcgtccgcaagaagggcggcgaggtggagctcgtcgcc
aaggacgaggtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgacctcg
ctcatcccgttcctcgagcacgacgacgcgaaccgcgccctcatgggcgccaacatgcag
cgccaggccgtcccgctggtccgcagcgagagccccctggtcggcaccggcatggagggc
tacaccgcgatcgacgccggtgacgtcgtcaccgccgacgccgcgggcgtcgtcaccgag
gtctcggccgacgtggtcgtggtccagctcgacgagggcggcacgcaggagtactacctg
cgcaagttcgaccgctcgaaccagggcgccagctacaaccaccgcgtgatcgtcgacgcc
ggtcagcgcatcgaggtcggcgaggtcatcgccgacggcccggcgacggagaacggcgag
ctcgcgctcggcaagaacctcctcgtcgcgttcatgccgtgggagggctacaactacgag
gacgcgatgatcctgtcgcagaacctcatcaaggacgacacgctctcctcgatccacatc
gaggagtacgaggtcgacgcccgcgacacgaagctcggcaaggaggagatcacccgtgac
ctccccaacgtcagcccggacctgctggccgacctcgacgagcgcggcatcatccgcatc
ggcgccgaggtccgccccggcgacatcctcgtgggcaaggtcacgccgaagggcgagacc
gagctcagcgccgaggagcgcctgctgcgcgccatcttcaacgagaagagccgtgaggtc
cgcgacacgtccctgaaggtgccccacggcgagcagggaacggtcatcggcgtcaaggtc
ttcgactcgcaggacggcgacgacgagctcggctcgggcgtcaaccagcgcgtggtcgtg
ttcatcgcccagaagcgcaagatcaccgcgggcgacaagctcgccggccgccacggcaac
aagggcgtcatctcgacgatcctccccgtggaggacatgcccttcctcgaggacggcacg
ccggtcgacatcatcctcaacccgctcggcgtccccggtcgaatgaacttcggccaggtg
ctcgagatccacctcgggtggatcgccgcgcagggctggaacgtcgagggcgtccaggag
tgggccaagaacctgcccccggaggcgctcagcgccgctcccggcaccaaggtcgccacc
ccggtgttcgacggcgccgccgagcgcgagatcgagggcctcctcgactcgaccctgccg
acccgtgacggcgaccgcctgatcggctcgtccggcaaggcgcgcctgttcgacggtcgt
tcgggtgagccgttcccgaaccccatctcggtcgggtacatgtacatcctgaagctgcac
cacctcgtcgacgacaagatccacgctcggtcgacgggcccctactcgatgatcacgcag
cagccgctgggtggtaaggcgcagttcggcggacagcgcttcggagagatggaggtgtgg
gccctcgaggcctacggcgccgcgtacgcgctgcaggagctcctgacgatcaagtccgac
gacatcctcggccgcgtgaaggtctacgaggcgatcgtcaagggcgagaacatccaggag
cccggcatcccggagagcttcaaggtcctcatcaaggagatgcagtcgctctgcctgaac
gtcgaggtcctctcggccgacggccagacggtcagcctgcgcgacacggacgacgaggtc
ttccgtgccgccgaagagctcggcatcaacatctcctcgcgcttcgagtcgtcgaacgtc
gacgaaatctga
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