Frigoribacterium sp. NBH87: F1C15_07800
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Entry
F1C15_07800 CDS
T06748
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
frn
Frigoribacterium sp. NBH87
Pathway
frn02020
Two-component system
frn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
frn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F1C15_07800
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F1C15_07800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frn03021
]
F1C15_07800
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
frn02035
]
F1C15_07800
Transcription machinery [BR:
frn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F1C15_07800
Bacterial motility proteins [BR:
frn02035
]
Flagellar system
Flagellar assembly proteins
Stator
F1C15_07800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
MarR_2
HTH_23
HTH_10
KORA
HTH_20
HTH_5
GntR
P22_Cro
HTH_AsnC-type
DUF7217
Sigma70_ECF
UPF0122
Motif
Other DBs
NCBI-ProteinID:
QNE43717
LinkDB
All DBs
Position
complement(1688074..1688904)
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AA seq
276 aa
AA seq
DB search
MNRTDRATRDALVVENLPLVGYLVSEVCSRATHLSRDDLASVGAVALVQAAEAFDPTLGI
PFGAYARTRVVGAFADDMRSGDWASRGTRKRIKETLAVQEALSASLGRAPSVDEIAGALG
VDRQTATAALTDAARTVSSLDDTVADHLAADVPLPGEQLLAAERSRYVRAAVEALPERMR
LIVEGVYFGDRTVTEIADELGITHSAVSQQRTEAVRLLRDALAAHYADDEAAEFVPVSKT
APARRSAYLSRVATNAAVGIARAMREPAADGFSAAV
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcaccgaccgcgccacccgcgacgccctcgtcgtcgagaacctgcccctcgtc
ggctacctcgtctccgaggtctgctcacgggccacgcacctctcgcgcgacgacctcgcc
agcgtcggcgcggtcgccctcgtgcaggccgccgaggccttcgaccccacgctcggcatc
ccgttcggcgcctacgcccgcacccgcgtcgtcggcgcgttcgccgacgacatgcgctcg
ggcgactgggcgagccgcggcacccgcaagcgcatcaaggagaccctggccgtgcaggag
gcgctgagcgcgtcgctggggcgcgccccctcggtcgacgagatcgccggtgccctcggg
gtcgaccgccagaccgcgaccgcggccctcaccgacgcggcgcggaccgtctcgagcctc
gacgacaccgtcgccgaccacctcgccgccgacgtgcccctgcccggcgagcagctgctc
gccgctgagcgcagccggtacgtgcgcgccgccgtcgaggcgctgcccgagcgcatgcgc
ctcatcgtcgagggcgtctacttcggcgaccgcacggtcaccgagatcgccgacgagctc
ggcatcacccacagcgccgtctcgcagcagcgcaccgaggccgtccgcctgctgcgcgac
gccctggcggcgcactacgccgacgacgaggcggccgagttcgtgccggtctcgaagacg
gcgcccgcgcgccgcagcgcctacctgtcgcgcgtcgccaccaacgccgccgtcggcatc
gcccgcgccatgcgcgagcccgccgcggacggcttcagcgccgccgtctag
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