Faecalibaculum rodentium: AALO17_00800
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Entry
AALO17_00800 CDS
T04268
Name
(GenBank) aTP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fro
Faecalibaculum rodentium
Pathway
fro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AALO17_00800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fro03019
]
AALO17_00800
03400 DNA repair and recombination proteins [BR:
fro03400
]
AALO17_00800
Enzymes [BR:
fro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AALO17_00800
Messenger RNA biogenesis [BR:
fro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AALO17_00800
DNA repair and recombination proteins [BR:
fro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AALO17_00800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMK53214
UniProt:
A0A140DRD7
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All DBs
Position
complement(90262..92112)
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AA seq
616 aa
AA seq
DB search
MSEQSQTRALEVLRQYFGYDAFRPGQKQAVEAILHHQDLLAVMPTGAGKSICFQVPALAC
PGVTLVISPLISLMQDQVRELVAAGIPAAYFNRSLSAAQYKTALARLRQGQYKIVYAAPE
RLMAPAFLDICRELDISLIAVDEAHCVSQWGQDFRPSYLKIREFIESLSQRPPVAAFTAT
ATGPVRQQIISLLGLQTPVQVVTGFDRPNLTWQVHRESDRLTALTYLIRQHRDQSGIVYC
ATRKTVEEVAAHLAKRGLSARPYHAGLGEEQRRQTQEDFIYDRIPVIVATNAFGMGINKP
DVRYVIHYQMPASMEAYYQEAGRAGRDGDPAQCILLYSPQDLRLQSYMIENGDPNPELSQ
EEAQLVKKRDMDRLFQMRSYAQSTSCLRSQILRYFGEDPGEDCGKCSNCLADYEDRDVTA
MAMAIFAGIVRTGSRFGQKRVIEVLRGADTEFIRSRNLKTNPAYGKLREHTARLLETLVT
QLCENGYLQVTGDYPILSLTPKACRAISSHSPVTVKTATSAERYTVLEESDELFEALRDV
RRTIAQKHRIPAYAVFNDATLHAMASKKPCTKEEMLRVQGIGEIKLRKYGQAFLRVIQKH
RRTEAAGADADVDPDL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacagtcccaaacccgcgccctggaggtgcttcgacaatactttggatacgac
gccttccggccgggacagaaacaggctgtagaagccatcctgcatcaccaggatctcctg
gctgtgatgcccaccggtgcaggcaagtccatctgcttccaggtgccggccctcgcttgc
cctggagtcacgctggtgatttcacctctcatcagccttatgcaggatcaggtccgggaa
ctggtggcagcagggatccccgctgcgtatttcaaccgctccctgtctgccgcgcaatac
aaaacagcgcttgcaagactgcggcaggggcagtacaaaatcgtgtatgcggcacccgag
cgcctgatggcaccggcgtttctcgatatctgccgggagctggatatcagcctcattgcg
gtggatgaagcccactgcgtctcgcaatggggacaggacttccggccatcctatctgaaa
atccgggagttcatagaatccctgtcccagcgtccgccggttgcagcgttcacagccaca
gccacaggcccggtccggcagcagatcatcagcctgcttggcctgcagacccctgtgcag
gtcgtgacgggatttgaccggcccaatctcacgtggcaggtgcaccgggaaagcgaccgg
ctgacagccctgacatatctgatcaggcagcaccgggatcagtccggtatcgtctactgc
gcaacgcggaaaaccgtggaagaagtagccgcacaccttgcaaaacgcggactcagcgca
cgaccctaccatgcggggcttggcgaagagcagcggcggcagacccaggaggacttcatt
tatgaccgcattccggtgatcgtggccaccaatgccttcggcatgggcatcaacaagccg
gatgtccgctacgtcatccactaccagatgccggcttccatggaggcctattaccaggaa
gccgggcgtgccggacgggacggtgatccggctcagtgcattctgctgtacagtccccag
gatctgcggctgcagtcctacatgattgaaaacggcgacccgaaccccgagctgtcgcag
gaggaagcacagctggtgaagaagcgcgacatggaccgactgttccagatgcggtcctat
gcacagtccacaagctgtctgcgttcacagatcctccggtacttcggggaggatccgggg
gaggactgtggcaagtgctccaactgtctggcagactacgaggaccgggatgtgactgca
atggccatggccatctttgcgggcattgtccggaccggatcccggttcggtcagaagcgt
gtcatcgaagtgctgcgtggtgcggatacagaattcatccgcagccggaacctgaagaca
aacccggcatacggaaagcttcgggagcacacagccagattgctggaaacactggtgacg
cagctctgcgaaaacggatacctgcaggtgacgggagactatcccatcctgtccctgacg
ccaaaagcctgccgggcaatttcctcccacagtcccgtgacagtgaaaaccgccacctct
gccgaacggtataccgtcctggaggaaagcgatgagctctttgaggcactgcgggatgtc
cggagaaccattgcgcagaaacaccggatcccggcctatgctgtgttcaacgatgcaacg
ctgcatgccatggcatcgaaaaagccctgcacgaaggaagagatgctccgggtgcagggg
attggcgagatcaagctgagaaaatatggtcaggcgttcctgcgtgtcattcagaaacat
cgccgaacagaggctgccggcgcagacgctgacgtagatccggatctctga
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