Faecalibaculum rodentium: AALO17_05150
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Entry
AALO17_05150 CDS
T04268
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fro
Faecalibaculum rodentium
Pathway
fro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AALO17_05150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fro03021
]
AALO17_05150
03400 DNA repair and recombination proteins [BR:
fro03400
]
AALO17_05150
Enzymes [BR:
fro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AALO17_05150
Transcription machinery [BR:
fro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AALO17_05150
DNA repair and recombination proteins [BR:
fro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AALO17_05150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
MCM_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AMK53649
UniProt:
A0A140DSM2
LinkDB
All DBs
Position
455934..459818
Genome browser
AA seq
1294 aa
AA seq
DB search
MSINKFSSIQVQLASPETIQRWSHGEVTKPETINYRSQKAEKDGLFCERIFGPTKDWECA
CGKYKKVRFKGVVCDRCGVEITKSSVRRERMGHIHLAAPIAHIWYLRGIPSRMALLLDVT
PKQLEEVVYFVSYIVTDPKDSGLAYKQVLSEREYRENLAIHGPTGFTAQTGAEAIQRLLQ
DVDLEAEYENVQKQLEKAQGEKRKKLIKRLDTINAFRHSDNKPEWMILTDVPVIPPDLRP
MLQLDGGRFATSDLNDLYRRVITRNNRLKKLLELGTPNIIVQNEKRMLQEAVDALIDNGR
RSKPITGAGGRALKSLSHSLKGKQGRFRQNLLGKRVDFSGRSVIAVGPDLKMYQCGIPRE
MAINLFKPFVINEIVNQDLAANPKNAEKLIERRDPRIWDVVEKVIEGYPVLMNRAPTLHR
LGIQAFLPKLVEGRAMRLHPLVCTAFNADFDGDQMAIHVPLGEEARAEALVMMLGSHNIL
GPKDGKPIVTPGQDMVMGNFYLTMEETADELSAEAGRYAEKNLPLEAANWQRYADNEGSV
FANEEEVMMAYQSGQVHLHSRIAVPVKGLKNTAFGEEHQNDYLATTVGKIIFNGMFPADF
PYINEVSKENFVATPDKYFIKPGQNVKEFIQSREIVPAFKKKDLGTIIAEVFKRYSVDET
AEILDQIKSMGFKYSTTAGITVALSDIEVAPNKEQHVDEGRAKAEALKKMQQKGLLTLPE
WESRLNKMWDDVKDQIADELMDNMPRKNPIFMMSESGARGNKQNFTQLAGMRGLMARPGH
GKSRTGEFVPSIIEVPIYSCFREGLNVSEFFLSTHGVRKGLTDTALKTAESGYLTRRLVD
VAQDVIIKEDDCGTDTGYWVEDLVDRKTNTVIESLQDRLTGRYSKQDVLDPETGEVIIES
DQFIDDAIAKKIVDAGVKGLYIRSPFTCKSSQGICRKCYGRNMATGKDVEVGEAVGIMAA
QSIGEPGTQLTMRTFHTGGVAGSGTGDITQGLPRVEELFEARHPKGVAVIAQISGEITAI
DRIEGTMRQEVTITNEHESVPHKLNANQSLRPWVKVGEKIEAGTAITEGPLDPKELLRVA
GVREVQDYILKEVKKVYQSQGIEISDKHLEVMIKQMLKKVMVTDSGDTDLNVGVQLSLNE
ITRINRDALLQGKIPAQFKPVLLGISKASVETDSFLSAASFQETTKVLTDATIKGKVDHL
VGLKENVIIGKLIPAGTGATGDRPQNLIIAQKAQELREKRLARMKEVHDEKFEEIVSANG
GDIQESAPSVSDEDLSMLNEEILETPDEFFGENE
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcaacaaattcagctccatccaggttcagcttgccagcccggagaccatccag
cggtggtctcatggggaagtgaccaagcctgaaaccatcaactaccgttctcagaaagcg
gaaaaagacggtctgttctgcgagcgcatcttcggtcccaccaaggactgggaatgtgcc
tgcggcaaatacaagaaagtccgtttcaagggcgtggtctgcgaccgctgcggtgtggag
atcaccaagagcagtgtgcggcgtgaacgcatgggccacattcatctggcggctcccatt
gcccacatctggtatctgcgcggcattccttcccggatggcgctgctgctggatgtgaca
ccgaaacagctggaggaagtcgtatacttcgtcagctatatcgtcacggatcccaaggac
tccggcctggcctacaagcaggtgctgtcggagcgggaataccgggaaaacctcgccatt
cacggccccacgggcttcacggcacagaccggtgcggaagccatccagcgcctgctgcag
gacgtggacctggaggccgaatacgaaaacgtccagaaacagctggagaaggcccagggc
gaaaagcgcaagaagctcatcaagcgcctggataccatcaatgccttccgccactcggac
aacaagcctgaatggatgatcctgacggatgtccccgtcatcccgcctgatctgcggccg
atgctgcagctggacggcgggcggttcgcgacgagtgacctgaacgacctgtaccggcgt
gtcatcacccggaacaaccgtctgaagaaacttctcgaactgggtacgccgaatatcatc
gtgcagaacgaaaagcgcatgctgcaggaagccgtggatgccctgattgacaacggacgc
cggtccaagccgatcaccggtgccggcggccgggcactgaagtccctgtcccactccctg
aagggaaaacagggccggttccggcagaacctgcttggcaagcgtgtagacttctccggc
cgttctgttatcgccgtgggaccggacctgaagatgtaccagtgcggcattccccgtgaa
atggcaatcaacctgttcaagccgttcgtgatcaacgagatcgtgaaccaggacctggcg
gccaacccgaagaacgccgagaagctcatcgagcgccgggatccccggatctgggatgtg
gtggaaaaggtcatcgaaggctaccctgtcctgatgaaccgtgcgccgacgctgcaccgt
ctgggcatccaggcgttcctgccgaaactggtggaaggacgcgccatgcgtctgcacccg
ctggtatgtacggccttcaacgccgactttgacggtgaccagatggccattcacgtgcct
ctgggagaagaagcccgtgcggaagccctggtcatgatgctgggcagccacaacatcctg
ggtcccaaggacggcaagccgatcgttaccccgggccaggacatggtcatgggcaacttc
tacctgacgatggaagagactgccgacgagctgtctgcggaagcaggccgctacgcggag
aagaacctgccgctggaagctgcaaactggcagcgctatgcggacaacgaaggctccgtg
ttcgccaacgaagaggaagtcatgatggcctaccagtccggccaggtgcacctgcactcc
cggatcgccgtgcctgtcaagggcctgaagaacaccgccttcggcgaggaacaccagaac
gactatctggccacgaccgtgggcaagatcatcttcaacggtatgttcccggcggatttc
ccgtacatcaacgaggtgtccaaggaaaactttgtggccactcccgacaagtacttcatc
aagccgggtcagaacgtgaaggaattcatccagagccgcgaaatcgtgccggccttcaag
aagaaggacctgggtaccatcattgcggaggtgttcaagcgctattccgtggatgaaacc
gccgaaatcctggaccagatcaagtccatgggattcaagtactcgactacagccggcatc
accgtggcgctgtccgacatcgaggttgccccgaacaaggagcagcacgtggatgaaggc
cgtgcgaaggccgaagccctgaagaagatgcagcagaagggtctgctgacgctgcccgaa
tgggaatcccgcctgaacaagatgtgggacgacgtcaaggaccagattgcggatgagctg
atggacaacatgccccggaaaaacccgattttcatgatgagtgagtccggtgcccgaggc
aacaagcagaacttcacccagctggccggtatgcgtggtctgatggcacgtcccggtcac
ggtaaatcccggacgggcgagtttgtgccctcgatcatcgaggtgcccatctactcctgc
ttccgtgaaggtctgaacgtgagtgaattcttcctgtccacccatggtgtgcggaagggt
ctgactgataccgctctgaagacagcggaatccggatacctgacccgtcgtctggtggat
gtggcacaggatgtcatcatcaaggaagacgactgcggcacagataccggttactgggtg
gaagacctggtggaccgcaagaccaacaccgtcatcgaaagcctgcaggaccgtctgacc
ggacgttactccaagcaggatgtgctggatcccgaaaccggggaggtcatcatcgagagc
gaccagttcatcgacgatgccattgcgaagaagatcgtggatgcaggcgtcaagggtctg
tacatccgctctcccttcacatgcaaatcctcccagggcatctgccggaagtgctatggc
cggaacatggccacgggcaaggacgtcgaagtgggtgaagcggtcggcatcatggctgcg
cagtccatcggtgaaccgggtacccagctgaccatgcgtacattccacaccggtggtgtg
gccggttccggtaccggtgacatcacacagggtcttccccgtgtcgaggaactgttcgaa
gcccgtcacccgaagggtgttgcggtcattgcacagatctccggcgagatcacggccatt
gaccgtatcgaaggcaccatgcgtcaggaagtcaccatcaccaacgaacacgagtctgtt
ccgcacaagctgaatgcgaaccagtccctgcggccgtgggtcaaggtcggcgagaaaatc
gaagccggtacggccatcaccgaaggaccgctggatcccaaggagctgctgcgcgtggcg
ggtgtccgcgaggtgcaggactacatcctgaaggaagtcaagaaggtgtaccagtctcag
ggtatcgagatttccgacaagcacctggaggtcatgatcaagcagatgctgaagaaggtc
atggtcacggactccggcgatacagacctgaatgtcggcgtccagctgtcgctgaacgaa
atcacccgcatcaaccgggatgcgctgctgcagggcaagatccccgcacagttcaagccc
gtcctgctgggtatttccaaggcttccgtggaaacggattccttcctgtccgccgcttcc
ttccaggaaaccacgaaggtgctgacggatgccacgatcaagggcaaggtcgaccacctg
gtgggcctgaaagaaaatgtcatcatcggcaagctgattccggccggaaccggtgccacg
ggtgaccgtccgcagaacctgatcattgcccagaaggcacaggaactgcgtgaaaagcgc
ctggcccggatgaaggaagtccacgacgagaagttcgaggagatcgtctctgccaacggc
ggtgacatccaggagtcggcaccgtccgtctccgatgaagatctgtccatgctcaacgag
gaaatcctcgagacaccggacgaattcttcggcgaaaacgaataa
DBGET
integrated database retrieval system
