Faecalibaculum rodentium: AALO17_10960
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Entry
AALO17_10960 CDS
T04268
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fro
Faecalibaculum rodentium
Pathway
fro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AALO17_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fro03021
]
AALO17_10960
Transcription machinery [BR:
fro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AALO17_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3744
HTH_10
Motif
Other DBs
NCBI-ProteinID:
AMK54230
UniProt:
A0A140DUA3
LinkDB
All DBs
Position
1005487..1006731
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AA seq
414 aa
AA seq
DB search
MPAKQNALKNKKFASVEDAKLYLEAMRDVGQDILQNEFMESISNLHLDDEATDQLFNWCE
DNGINFVMDNDEEDYESEDADDLDEDEEDENSVEDEISQLEQTFANASHTKINDPVKMYL
KEIGQIPLLNPKQEPVIAKAIQDGEDARAKLAAEPDLSDEEKKELNRISVEGEQAKQLLI
SSNLRLVVSIAKKYVGRGMLFLDLIQEGNCGLIKAVEKFDYTKGFKFSTYATWWIRQSIT
RAIADQARTIRIPVHMVETINKLTRIQRQLVQDLGRDPLPEEIAEKMEGISAEKVRDIQK
IALDPVSLETPIGEEDDSHLGDFIEDKETLSPDDYTNNQLLKDEINAVLQGLTEREEKVL
RLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPNRSKRLKDFVKS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgccagcgaaacaaaacgctttgaaaaataaaaaatttgccagtgtggaggatgccaag
ctgtatctggaagctatgcgggatgtcggacaggatatcctgcagaatgaatttatggaa
tccatctccaatctgcatctggatgacgaagccacggaccagctcttcaactggtgcgaa
gacaacggcatcaatttcgtgatggacaacgatgaggaagactatgagtcggaggatgcc
gatgatctggatgaggatgaagaggacgaaaattccgttgaagatgaaatcagccagctg
gagcagacatttgccaatgccagtcacaccaagatcaacgatccagtcaagatgtatctc
aaggagatcggacagattccgcttctgaacccgaaacaggaacccgtgattgccaaagcg
atccaggatggagaagatgcccgggcaaaactggcagccgaaccggatctttccgatgag
gaaaagaaagaactgaaccgcatttcggtggaaggcgagcaggccaaacagctgctgatc
agctccaacctccgtctggtggtctccattgccaaaaaatatgtcggacgcggcatgctc
tttctggatctgatccaggagggcaactgcggtctgatcaaggcagtggaaaagtttgac
tacaccaaaggattcaagttttccacctatgccacatggtggatccgtcagtccatcacc
cgtgccattgcggatcaggcccgtaccatccggatcccggtccacatggtggaaaccatc
aacaagctgacgcgtatccagcgccagctggtgcaggatcttggacgggatccccttccg
gaggaaatcgccgagaaaatggaaggcatcagtgcggaaaaagtccgcgatatccagaaa
atcgcattggatccggtttctctggaaactccgatcggcgaggaagatgactcgcatctg
ggagatttcattgaggacaaggaaacactctccccggatgactataccaacaaccagctg
ctcaaagatgagatcaatgctgttctccagggtctgacagagcgggaggagaaggtgctg
cgcctccggttcgggctgtatgatggcaggacccgcaccctggaggaagtcggcaaggaa
ttcaatgtgaccagggaacggatccggcagatcgaggccaaggcgctgagaaaactgaag
caccccaaccgcagcaagcgcctgaaggatttcgtcaagtcatga
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