Faecalibaculum rodentium: AALO17_27900
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Entry
AALO17_27900 CDS
T04268
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fro
Faecalibaculum rodentium
Pathway
fro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AALO17_27900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fro03400
]
AALO17_27900
Enzymes [BR:
fro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AALO17_27900
DNA repair and recombination proteins [BR:
fro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AALO17_27900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
IstB_IS21
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AMK55924
UniProt:
A0A140DZ47
LinkDB
All DBs
Position
complement(2535626..2539027)
Genome browser
AA seq
1133 aa
AA seq
DB search
MPMTQEIRDWLKHNPAVHALMDGENRLGNLFPMEEALVLASAFSADRKTRIIIKKDRYAA
QQLYARLNPLVEDVLLFTSDESLRVQEIASSPEEKEEQLDVLQQLATDEKPRLIITNTAG
FLRFLPDKDLFASLIFDLKPGMELDMASLKKALNRAGYSKVNYVDRPLTYASRGGIVDIF
TLEYDHPVRIEFFDTEIDSIRFFDENSQRTIHTTDCVRIVPATDLLFTENQLAEIETKAR
DLLKTAVARLDEEAARSLTEQVEEDLRGLRTYDTAASLYRMFSLTSAASLLDYVPGTVIL
SSEEEVFLAEKKIRTENTAFVQELVTENRSLPVYTLFHDLVTLEKQRPFQVIHQFEDLKD
PIVSGIRPVDEVREPLDIFLKNMREQTWFAVSDTEAKLLKDRAEGRKIRRVEGWYYEGFR
TEDFDVYTSRELFSKPVRHHRYQKTFKEGQMLSNVLELEPGDYVVHSQYGIGQYLGTVQR
TQKGRIQDYLHIAYRGQDELFVPLAQFQLVRKYISKEGTGVRLSQLGSGQWQKTRERVSQ
KVEEIAGRLVELYAERNEEIGFAFPKDDALQVEFDEAFPYTPTPDQLQATAEIKAEMEKA
KPMDHLLCGDVGFGKTEVAMRCAFKAIESGKQVAFLCPTTVLALQHYKTLEKRFEYTGAR
IEMVSRFTPEKKLKEIRKGLKDGTVDIVVGTHKLLSKTIQYKDLGFLIIDEEQRFGVEHK
EKIKEMKNSIDVLSLSATPIPRTLQMSLIGVRTISQLNTPPAHRHPIQTYVMEKRSTVVQ
EVIARELARDGQVFYLYNHVSNINAVAAHLQAQFPDAPVGVAHGRMSRDDIEQVMLDFAK
GKYKILVCTTIIETGLDIENANTMIIEDADHFGLSQLYQIRGRVGRRDRIAYCYLMVQPR
KQITEQAAKRLRSIREFTQLGSGYKIAMRDLTIRGAGDMLGPQQAGFIDQVGLDLYLEML
SEAIARKQGRMPVKKEPEKSAAISIGGYIPAGFTDNDGDKLALYQEIRDAKTPQQLEACE
SRVTDLFGRIPKDVMELFEQRRLDLFVMQPGVAGLKETPAAYVVTMDAAWSGSVDGRRLF
EEVSALSRQVKLRMKSGQIEILVDRKSRRPVHLLLELSKLLMQDSLKKTAKGE
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
ttgcccatgacacaggaaattcgagactggctcaaacacaaccctgctgtccatgcactc
atggacggagaaaacaggcttgggaatctgtttcccatggaagaagcactggtccttgcc
agtgccttttctgctgacagaaaaacccggatcatcataaagaaagaccgctatgcggca
cagcagctgtatgcaagactcaatccgctggtggaggatgtgctgctgtttaccagcgac
gaaagtctgcgggtacaggaaatcgcttccagtcccgaggagaaggaagaacagctggat
gtgctgcagcagctggcaactgatgaaaaaccacgtctgatcatcacgaacacagccggc
tttctgcgctttcttccggacaaagacctgtttgcttccctgatttttgacctgaaaccg
ggaatggaactggatatggcgtccctgaaaaaagcgctcaacagagccggatattcaaag
gtgaattatgtggaccgtcctctgacctacgcaagccggggaggaatcgtggatatattc
acgctggaatacgatcatccggtccggatcgagttttttgacacagaaatcgactcaatc
cgtttcttcgatgagaattcacagcgtaccattcataccacggactgcgtaagaatcgtt
ccggccaccgatctgctgttcacagagaatcagctggctgaaatagaaacaaaagcccgg
gaccttctgaaaactgcagtggcccgtctggatgaggaagcggcccggagcctcacggaa
caggtggaggaagaccttcgggggctgcggacatatgacactgctgccagtctgtacagg
atgttttccctgacatctgcagccagtctgctggattacgtcccgggaactgtcattctc
tccagcgaagaagaagtgttcctggcggagaaaaagattcgcaccgaaaatactgccttt
gtgcaggaactggtgacagaaaaccgtagtcttccggtctatacactgtttcatgatctg
gtgactcttgaaaaacagcggccgttccaggtcattcatcagtttgaagacctgaaggat
cccattgtgtccggaatccggcctgtggatgaagtccgggagccactggatatttttctg
aagaacatgcgggaacagacctggtttgccgtcagtgacacagaggcaaagctgctgaaa
gaccgcgccgaaggcaggaaaatccgccgggtcgagggctggtattacgaaggattcaga
acggaagacttcgatgtgtatacgtcccgggaactgttttccaagcctgtccgtcaccat
cggtatcagaagacgttcaaggaaggacagatgctctccaatgtcctggaactggagccg
ggagactatgtagtgcacagtcagtatggaatcgggcagtatcttggaaccgtgcagcgg
acgcagaaaggccgcattcaggattatctgcatattgcctacaggggacaggacgaactg
tttgttcctctggcgcagttccagctcgtccgcaagtacatctccaaggaagggactggt
gtcaggctgtctcagcttggatccggccagtggcagaaaacccgggaacgagtcagtcag
aaggtcgaggaaatcgcaggacggctggtggagctgtatgccgagagaaatgaagagatc
ggctttgcctttccgaaggatgacgccctgcaggtggagtttgatgaggcatttccctac
acgccaaccccggaccagctccaggcaacggcggagatcaaggcagaaatggaaaaagcc
aagccgatggatcaccttttgtgcggggatgtgggatttggaaaaacagaagtggcgatg
cgctgtgccttcaaggccatcgaaagcggaaaacaggtggcgttcctttgtccgaccacc
gtactggcactgcagcattacaagaccctggaaaaacggttcgaatacacaggggcaaga
attgagatggtgagccggtttaccccggaaaaaaagctgaaggaaatccgaaagggactg
aaggatggaacggtggatatcgtggtgggcacccacaaactgctgtcgaaaaccattcag
tacaaagacctgggattcctgatcattgacgaggagcagcggttcggggtggagcacaag
gaaaaaatcaaggagatgaaaaactcaattgacgtcctgtcactgtccgccacccccatt
cccagaactctgcagatgtcgctgatcggcgtgcggaccatttcccagctcaatacaccg
ccggcacaccgtcatcccattcagacatatgtcatggagaaacggagcacggtggtgcag
gaagtcattgcccgggaactggccagggatggacaggtgttctatctctacaatcatgta
tcgaacatcaacgccgtggctgcccacctgcaggcacagtttcccgatgcaccggtcggc
gtcgcgcatggccggatgagccgggatgacattgagcaggtgatgctggattttgccaag
gggaaatataagatcctggtctgcacgaccatcattgaaacgggcctggatatagaaaat
gccaataccatgatcatcgaagatgccgatcatttcggtctgtcccagctctaccagatc
cggggacgggtggggcgcagagacaggatcgcctattgttatctcatggtgcagcccagg
aagcagatcacggaacaggccgcaaaacggctgcggtccatccgggaattcacgcagctg
ggatcggggtacaagattgccatgcgggatctgaccatccggggtgctggcgacatgttg
ggaccgcagcaggccgggttcatcgaccaggtcggtctggatctgtatctggagatgctg
tccgaggcgattgcccgcaaacagggaagaatgcctgtgaaaaaagaaccggagaagtcg
gcggccatcagcattgggggatatattccggcgggattcaccgacaatgacggggacaaa
ctggctctgtatcaggaaatccgggatgcaaaaacaccgcagcagctggaggcctgtgaa
agccgcgtgacggatctctttggacggatcccgaaagatgtcatggagctgttcgaacag
aggcggctggatctctttgtcatgcagccaggcgtggcgggtctgaaagaaacaccggct
gcctatgtcgtgacgatggatgccgcctggtctggcagtgtggatgggcgcaggctgttt
gaggaggtctcggccctgtccagacaggtgaagctgcggatgaaaagcggtcagatagaa
atcctggtggatcgcaagagccgtcggccggtacacctgctgctggagctttcgaagctc
ctgatgcaggactcgctgaaaaaaaccgcgaaaggagaataa
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