Frondihabitans sp. PAMC 28766: AX769_07995
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Entry
AX769_07995 CDS
T04281
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
frp
Frondihabitans sp. PAMC 28766
Brite
KEGG Orthology (KO) [BR:
frp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frp03019
]
AX769_07995
Enzymes [BR:
frp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AX769_07995
Messenger RNA biogenesis [BR:
frp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AX769_07995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
T2SSE
nSTAND3
AAA_30
NACHT
SLFN-g3_helicase
PhoH
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AMM20118
UniProt:
A0A126YYY4
LinkDB
All DBs
Position
complement(1629369..1633157)
Genome browser
AA seq
1262 aa
AA seq
DB search
MIPAIAFPPELPVSQRRDDIAAAIRDNQVVIVAGATGSGKTTQLPKICLELGREMIGHTQ
PRRIAARSVAERIADELGVELGSLVGYQVRFTDQVGADTRVKLMTDGILLNEIHFDRDLK
KYDTIIIDEAHERSLTIDFLIGYFKQLLPRRPDLKLIITSATIDPESFSKHFDGAPIIEV
SGRTYPVEIRYRPLVAEDDAAGDDEDVDDDGNDRGRRERADDKDYLTGINDALDELSRES
NGDVLVFLSGENEIRDAEESIRGRGLPFTEALPLYGRLSAADQHRVFEPSRTAGTRRRII
LATNVAETSLTVPGIRYVIDAGTARISRYSTRAKVQRLPIEAISQASANQRSGRSGRTSD
GIAIRLYSEQDFDARPEFTEPEILRTNLAAVILQMISLGLGDIAGFPFLQPPDSRGIKDG
LDLLRELTAVDSRGEITRIGKQITRLPIDPRLARMVLESKQHGTTREVMAIVAALSIQDP
RERPLEKRPQADQQHARFTDPSGDFLSFLNLWNYLEEKQEEMGSSAFRRLCKAEYLNYLR
IREWQDVYRQLVRASKTLGLHVGPPAANPDGVHKSLLAGLLSQIGLKDVQKKDYVGARQS
RFVIFPGSALAKKQPNAIMAAELVETSRLFARVAGAIDPAWAAPIAGDLVKRSHSEPHWE
KKQGAVVAFERVTLYGVPIIPRQRVQFNRIDPPYARELFIRHALVENDWESHQAFQQKNE
QLIDELTELEERTRRRDILVDGDAVFEFYHRRIPADVNTMRSFEGWWRKARHETPDLLTM
RAEDLLGDDEPEVDESAYPTDWRQGDQTLALRYRFEPGSHDDGVTVLVPLPLLARLSPLG
FDWQVPAFRDELIQALIKSLPKQIRKNVVPAADWAAKIRAELPSEPPQEPTEPFTATVAT
VIKRLTYTPVAEGDFDLTRIPGHLRITFAVVDERSRVVGIDKDLPALQKQLAQDTRRSVA
RATEVPAAAGPSIQRAGLARWDFDDLPAFVDTRHGETTVRAYPALVDDGSSVSIQLMATA
QDQAIATPRGVRRLLMLGTPSPVAYVQQHLTAPEKLILATSPYQNTAALFADCLTAVVDD
VLFRVKADGMILTRKEFETVRDRVSAAVMDSMFQTVSLVARTLTAGRDADKALKQATNIS
LLPALTDAREQRGRLVYPGFVAQTGLQQLQRVPVYLVGIQRRITKLLENPARDRAWMVEV
QQATTRYVDAGGAFPPAPSDPAPLVRARWMLEEFRLSLFAQDLRPAESVSLQRIRKVLAG
AS
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgattcccgccatcgccttcccgcccgagctgccggtcagccagcgccgcgacgacatt
gccgctgccatccgcgacaaccaggtggtcatcgtcgccggcgcgacgggctcgggcaag
acgacgcagctgccgaagatctgcctcgagctggggcgagagatgatcggccacacgcag
ccccgacgtattgccgcgcgcagcgtggccgagcggatcgccgacgagctcggcgtcgag
ctgggctctctcgtcggctaccaggtgcgcttcaccgaccaggtcggggccgacacgcgc
gtcaagctgatgaccgacggcatcctgctcaacgagatccacttcgatcgcgatctcaag
aagtacgacaccatcatcatcgacgaggcgcacgagcgcagcctcaccatcgacttcctg
atcggctacttcaagcagctgctgccgcgccgccccgacctcaagctcatcatcaccagc
gcgacgatcgaccccgagtcgttctcgaagcacttcgacggggcgccgatcatcgaggtg
tcgggtcggacgtatccggtcgagatccggtatcggccattggtcgccgaagacgacgcg
gcgggtgacgatgaagacgtcgacgacgacggcaacgaccgcgggcgccgcgagcgagca
gacgacaaggattacctcaccggcatcaacgacgccctcgacgagctgagccgcgagtcg
aacggcgacgtgctcgtcttcttgagcggcgagaacgagatccgcgacgccgaggagtcg
atccgcgggcggggcctccccttcaccgaggcgctccccctctacggccgcctcagcgca
gccgaccagcaccgggtcttcgagccgagccgcacagcgggcacccgccgccgcatcatc
ctggcgaccaacgtcgccgagaccagcctcaccgtgcccggcatccgctacgtgatcgac
gccggcaccgcccgcatcagccgctactccacgagagccaaggtgcagcgccttcccatc
gaggccatctcgcaggcctccgcgaaccagcgctccgggcgctcgggccgcaccagcgac
ggaatcgcgatccgcctctacagcgagcaggacttcgacgccaggcccgagttcaccgaa
cccgagatcctgcgcacgaatctcgcggccgtgatcctgcagatgatctcgctcggcctc
ggcgacatcgccggcttccccttcttgcagccgcccgactcgcgcggcatcaaagacggt
ctcgatctgctgcgcgagctgaccgcggtcgactcgaggggcgagatcaccaggatcggc
aagcagatcacccgcctgcccatcgacccgcggctcgcgcgcatggtgctcgaatcgaag
cagcacggcaccacccgcgaggtcatggcgatcgtcgcggccctcagcatccaggatccg
cgcgagcgccccctcgagaagcgcccgcaggccgaccagcagcacgcgcggttcaccgac
ccgagcggcgacttcctcagcttcctgaacctctggaactacctggaggagaagcaggag
gagatgggctcgagcgccttccggcggctctgcaaggccgaatacctgaactacctgcgc
atccgcgagtggcaggacgtctaccggcagctcgtccgcgcctccaaaacgctcggcctc
cacgtcggcccgcccgccgcgaaccccgacggcgtccacaagtcgctgctcgccggcctc
ctcagccagatcggcctgaaagacgtgcagaagaaggactacgtcggggcgcgccagtcg
cgtttcgtgatcttccccgggtcggccctcgccaaaaagcagccgaacgcgatcatggcg
gccgagctcgtcgagacgtcgcgcctgttcgcgagagtggcgggcgcgatcgatcctgcc
tgggccgccccgatcgccggcgacctcgtcaagcgcagccactccgagccgcactgggag
aagaagcagggcgccgtcgtggcgttcgagcgcgtcacgctgtacggggtgccgatcatc
ccccggcagcgcgttcagttcaaccggatcgacccgccatacgcccgcgagctcttcatc
cgccacgccctcgtcgagaacgactgggagtcgcatcaggccttccagcagaagaacgag
cagctgatcgacgagctgacagagctcgaagagcgcacccggcgccgggacatcctggtc
gacggcgacgcggtgttcgagttctaccatcggcgcatcccggccgacgtcaacacgatg
cgcagcttcgagggctggtggaggaaggcccgccacgagacccccgaccttttgacgatg
agggccgaagacctcctcggcgacgacgagcccgaggtcgacgagagcgcctacccgacc
gactggcggcagggcgatcagacgctggccctccgttaccgcttcgagccgggctcgcac
gacgacggggtcacggtgctcgtgccgctgccgcttctcgcccgactcagcccgctcggc
ttcgactggcaggtgcccgccttccgcgatgagctgatccaggcgctcatcaagtcgctg
cccaagcagatccgcaagaacgtcgtgcccgccgccgactgggcggccaagatccgggcc
gagctgccgagcgaacccccgcaggagcccaccgagccgttcaccgcgacggtcgccacg
gtcatcaaacggctcacctacacgccggtggccgagggcgacttcgacctgacccgcatc
ccgggccacctgcgcatcacgttcgccgtggtcgacgagcgctcgcgcgtggtcggcatc
gacaaagacctccccgccctgcagaagcagctcgcccaggacactcgccggagcgtcgcc
cgcgccaccgaagtgccagcggccgcgggcccgtcgatccagcgcgctgggctcgcgagg
tgggacttcgacgacctccccgccttcgtcgacacgaggcacggcgagaccaccgtccgc
gcttacccggccctcgtcgacgacggctcgtcggtctcgatccagctgatggccacggcg
caggatcaagcgatcgccaccccgcggggcgtgcggcgcctgctgatgctcggcaccccc
tcccccgtcgcgtacgtgcagcagcacctcacggcccccgaaaagctgattctcgccacg
agcccctaccagaacaccgcggcgctcttcgccgactgcctgaccgccgtcgtcgacgac
gtgctcttccgcgtcaaggccgacggcatgatcctcaccaggaaggaattcgagacggta
cgcgaccgggtgtcggctgccgtcatggactcgatgttccagaccgtctcgctggtcgcc
cgcacgctgacagcggggcgcgacgccgataaggcgctcaagcaggcgacgaacatctcg
ttgctgccggccctgaccgatgctcgcgagcagcgcggtcgcctcgtctaccccggcttc
gtcgctcagacgggcctgcagcagctgcagcgcgtgccggtctacctcgtcggcatccag
cgccgcatcacgaagctgctcgagaacccggcccgcgaccgagcgtggatggtcgaggtg
cagcaggcgacgacgcgctacgtcgacgcgggcggcgccttccccccggccccgtcggat
cctgcgcccctcgtgcgagcccgctggatgctcgaggagttccggctgtcgctcttcgcg
caagacctgcggccggccgaatctgtgtccctgcagcgcatccggaaggtgctcgccggc
gcctcctga
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