Fervidobacterium riparium: IB67_00050
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Entry
IB67_00050 CDS
T08552
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
frr
Fervidobacterium riparium
Pathway
frr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
frr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IB67_00050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frr03021
]
IB67_00050
03400 DNA repair and recombination proteins [BR:
frr03400
]
IB67_00050
Enzymes [BR:
frr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IB67_00050
Transcription machinery [BR:
frr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IB67_00050
DNA repair and recombination proteins [BR:
frr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IB67_00050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Apocytochr_F_C
NQRA_N
Topo-V_HhH_2_2nd
RestrictionSfiI
YkoP
Motif
Other DBs
NCBI-ProteinID:
UXF00027
LinkDB
All DBs
Position
11372..16324
Genome browser
AA seq
1650 aa
AA seq
DB search
MSSSFKRKIAKVKVSVASPDVVRIWSSGEVKKAETINYRTFKPEKEGLFCERIFGPVKDY
ECACGKYSGKKYEGTVCEKCGVRVESKEARRRRFGHIELAAPVTHVWYLKNTPSVIATLL
DMTVKDIENIVYFGSRRVNERVVIVTDPKNTLFVKGSILNQTEYEIYAKKWDFEVSPAYI
VKEPRTPLISDIDGEVHLKHVRTHTDRDLTWITVKNVMRTELRLYTGMELKVKDGDFVNQ
GDEIVPEKHVNAIFAPFDGTVEVDQFSESVTINPLPTSKNTPITFSLPYGVRALVKNGDK
VKKGQQLTTETILPRLIAPVSGTIRYSKQLNLRPLENGSYEVITTGELYIENVQHTKTYP
VFEGALVYVQDGETVRAGDVLADRFLFEDEKLTAEEYKLFSQHYHGMFVVEEQIENDKPI
MVITQIDSDVAQETGLTKGQIITQQDYEAYSMIYPGKIEAETGAAAIKKLLQQLDLEVMK
AEIENELNNIPKSSVRAKKLLKKLKIVKDLIDSETKPEWMVLEVLPVVPPEIRPMIQIDG
GRFATTDLNDLYRRVLMRNNRLSRLYEMNAPEVIVRNEKRMLQEAVDNLIFNGKIGKAYA
DRNGRPLKSLTDLIRGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMALELF
EPFVIAELSKEENVEATQTKVKKYRKELQREDPKAWEKLEKVIQGKVVLLNRAPTLHRMS
IQAFEPKLIEGNAIQLHPLVCPPFNADFDGDQMAVHLPLSPAAQAEARLLMLSRYNIISP
AHGKPISMPGKDIVAGVYYLTMVGKDYDKIQPEEIKWKFASSEEAEIAYEFGYIKLHEPL
LINIDGKVIKTTFGRVIFNAILPEELRDYNKTIGKNGIKDVVYKTFKTHGIDRTADLLDD
IKTLGFHYATVSGLTISLKDFLISPKKDEIIGEAMKKIEEIERLYEEGLLSDDERYKETI
KIWTKTTDLVQEETYKYLGENPFNPVYIMVDSGARGNKDQLKQLSGMRGLMADPSGRTIE
IPIISNFREGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLVDVVQSVVVSQPDCGT
HEGVRASKMKSSDNFVVEKIEDFIFGRLLAKPVYDPGTGDVLVNPETGKVYVKDTVIYDE
DAKFLSNYKKRVPVAEERILDLTKVELPEVYAELAEDVDLGSETLVSETEIDWEVIKKLR
EANVKSVKIRLYPIVGNVVAEEIIWDKDRKRQLAVEEEQIDSNLAKLLAENNIESIVVRP
EIYVRSPLTCESEHGICAKCYGLDLSNHKVVNVGESVGIIAAQSIGEPGTQLTMRTFHTG
GIATTADITQGLPRVEELFEARKKTKDPEGIFSKVKGTVVDISQDEPKKIYVQDELGSIH
EYVVPSRVRINVTVGQKVLPGQSLTSGSLKVRRILEELGVEDTATYLLKEIKKVYVQQGV
DIHDKHFELIIKQMLNKVEVIESGDTDFLPGDLVPIALINKVNKEIMENNAKIELNRKRL
IGKTIARHILIKNEEGIVEEIAKEGDEVTEELLEKLINFGVKEVVVLNHDKEKEVYQILP
KETAKYRRKLLRITQASLEYEGWLSAASFQQTQQVLTDAAIKGALDTLRGLKENVIVGQL
IPAGTGFEIFANVQYEETPRHAKEEKEKLA
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttcttttaagagaaaaatcgcaaaagtgaaagtttccgtagcatcgcccgat
gttgtcaggatatggtcaagcggagaagttaagaaagccgagacgatcaattaccgtacc
tttaagccagaaaaagaaggtttgttctgtgaaaggatattcggacctgtaaaagactac
gaatgtgcttgtggaaagtacagcggaaagaagtacgaaggtacggtttgtgaaaagtgt
ggtgtaagggtcgagtcaaaagaagcaagaaggagaagattcggtcatatagagcttgct
gcacctgttacacacgtttggtatcttaaaaacaccccaagtgtcatagcgacacttttg
gatatgaccgtaaaagatattgaaaacatagtctactttggcagcaggcgtgtgaatgaa
agggtcgtcatcgtaaccgatccaaaaaatacgttatttgtcaaaggttccatactgaac
caaacggaatacgaaatatatgctaaaaagtgggattttgaagtctcgccagcatatatt
gtcaaagaaccaaggacaccgcttatctctgatatagacggggaagtccacctcaagcac
gtaagaacgcacacagacagggatttaacttggatcacagtcaagaacgttatgcgaact
gaactcaggctttacactggtatggaattgaaagtaaaagacggggattttgtaaaccaa
ggtgacgagatagttccagaaaagcacgttaacgcaatatttgcaccattcgacggaaca
gttgaagtggatcagttctcagaaagtgtaacgattaatcctttgccaacgagtaagaat
acaccaataacgttctctttaccttatggcgtaagagctcttgtcaaaaacggagataag
gtaaagaaagggcagcaattgacaacggaaacgatactgccaaggttgatagcacctgtt
tccggtactattagatacagtaagcaactcaatttgaggccactggaaaatggctcgtat
gaagttataaccactggtgagctgtacatagaaaacgttcagcatacaaagacctatccc
gtctttgaaggtgctcttgtctacgtacaagacggtgaaacagtaagagctggcgatgta
ctggctgatagattcttatttgaagatgaaaaattaacggcagaggagtacaagcttttc
agccagcactaccatggaatgttcgttgttgaagagcaaatcgaaaacgataaaccaata
atggtaattacacaaatagactcagacgttgcacaagaaacaggattaacgaaagggcag
ataattactcaacaggactacgaagcatacagcatgatataccctgggaagatagaagca
gagacaggtgctgccgcaattaagaaattactccaacagctcgatctcgaagtgatgaag
gcagagatagagaacgaactcaacaacataccaaagagcagtgttagggctaagaagtta
ttgaagaaattgaagatagtgaaggatcttatcgacagtgaaacgaaacctgaatggatg
gtcctcgaagtcttgccagtcgttccaccggaaatccgtccgatgattcagatcgacggt
ggaaggtttgcaacgactgacctaaatgacctttacagaagagtactgatgagaaacaac
aggctcagtagattgtatgaaatgaacgcacctgaagttatagtaagaaacgaaaagcgt
atgcttcaagaagctgtcgataatttgatcttcaatggaaagataggtaaggcttacgca
gatagaaatggcagacctttaaaatcgctcacagacttgataagaggtaagaaaggtaga
ttcagaagaaatctcttaggtaagcgtgtcgactactccggacgtgctgtcatagtcgtc
ggtccgcacctcaagatacatgagtgtggtttgccaaagaagatggcactcgagctcttt
gagccatttgtgatcgcagaactttcaaaagaagaaaacgttgaagcaacacagacaaaa
gtcaagaaatacagaaaagagctccaaagagaagacccgaaggcttgggaaaagctcgaa
aaagttatccaaggtaaggtcgtccttctcaaccgtgctccaacacttcatagaatgtca
atacaagccttcgaaccgaaattaattgaaggcaatgctatacagctgcatccgcttgta
tgtccaccgtttaacgcagacttcgatggtgaccagatggcagtccacctaccactttca
cctgctgcacaagcggaagcaaggttattgatgctttcaaggtacaacataatctctcca
gcgcacggaaaaccgatatcgatgccaggtaaggatatcgtagctggtgtttactactta
acgatggtcggaaaagactacgacaaaattcaaccagaagagatcaaatggaaattcgca
agctccgaagaagcggaaatagcttatgaatttggatatataaaactacacgaaccttta
ctaattaacatcgatggcaaagtaataaaaacaacgtttggaagggtcatattcaacgcc
atattgccagaagaactcagagactacaacaagacgattggtaagaacggaatcaaggat
gtcgtgtacaaaacattcaaaacgcacggaatcgatagaacagcggacttgctcgatgac
ataaaaactcttggtttccactacgcaacagtatccggtcttactataagtttgaaagac
ttcttgatttcgcctaagaaagacgaaataataggcgaagctatgaagaagatagaagaa
atagaaaggctctacgaagaaggtcttcttagcgatgatgaaagatacaaggaaacgatc
aagatttggacgaagactacggatcttgtccaggaagaaacatacaaatacctcggtgag
aatccgttcaacccagtatacataatggtcgattctggagcaagaggtaacaaagaccag
cttaagcagctttcaggtatgcgcggtcttatggctgacccatcaggaagaacgatcgag
attccaattatctctaacttccgcgaaggattgtcagttcttgagttcttcatcagtacg
cacggtgcaagaaagggatccgcagacacggcattgaggacaagttctgcaggatatctt
acaagaaggctcgtggatgttgttcaaagtgtcgtcgtctcacaacctgactgtggtact
cacgaaggcgttagagcttccaagatgaagagctctgacaacttcgtagttgaaaagatc
gaagacttcatattcggcagattactcgcaaaacctgtttatgatccaggtacgggtgac
gtactcgttaatcctgaaacaggaaaagtgtatgtcaaagatactgttatctatgatgaa
gatgctaagttcctttcaaattacaagaagcgcgtgccagttgctgaagaaagaatctta
gatttgacaaaggtagaattgcctgaggtatatgctgagctcgcagaagatgtcgatctg
ggttctgaaacgttagttagcgaaacagaaattgactgggaagtaataaagaaacttaga
gaagcgaatgtaaaatccgtaaagataagactctatccaatcgttggaaacgtcgttgca
gaagaaatcatatgggataaagatagaaagagacaattagctgttgaagaggaacaaatc
gattcgaaccttgcaaaattgctcgcagaaaacaacatcgaaagcatagttgttaggccg
gagatatacgtcaggtcaccacttacatgtgagtcagagcatggcatttgtgctaagtgt
tacggattggacctttcaaaccacaaagttgtgaacgttggcgaatcagtaggtatcatc
gctgcacaatcaatcggtgaaccaggtacacagctcacaatgagaactttccacactggt
ggtatcgcaacaacagcagacatcacgcaaggtttgccaagggtcgaagagctattcgaa
gctcgaaagaagacaaaggatccagaaggtatattctccaaagtaaaaggtacagttgtc
gacatctctcaagacgaaccaaagaagatatacgtacaagacgaacttggatccatacat
gaatacgttgtaccttcaagagtgagaattaacgtaaccgttgggcaaaaagttctccct
ggtcagtcacttacaagcggctcactcaaggtgagaaggatacttgaagaacttggtgtt
gaagacacagcaacgtatctgcttaaagaaatcaagaaggtttacgtacaacaaggtgtc
gatattcacgacaaacactttgagcttataatcaaacagatgctcaacaaggtcgaagtc
atcgagtccggtgacaccgacttcttgccaggtgatcttgtgccaatcgctctgatcaac
aaagtgaacaaggaaatcatggaaaacaacgcaaagatagagcttaacagaaagagactc
attggaaaaactatagcaaggcacatattaataaagaacgaagaaggcattgtcgaagaa
atagccaaagaaggcgatgaggtgacggaagaactgctcgaaaaactcatcaacttcgga
gtaaaagaggttgttgtactaaaccatgacaaagagaaagaagtataccagatacttcca
aaagaaacagcaaaatacagaaggaaattgctcagaatcacacaagcatcgcttgaatac
gaaggctggctgagtgcggcaagtttccagcagacacaacaggtccttaccgatgcggca
atcaaaggtgcgttagacacgctaagaggtctcaaagaaaacgtcatcgtaggacagctg
ataccagcaggtacaggatttgaaatcttcgcaaacgtccagtatgaggaaacaccaaga
catgcaaaagaagaaaaggaaaaattagcatga
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integrated database retrieval system
