Fervidobacterium riparium: IB67_00815
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Entry
IB67_00815 CDS
T08552
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
frr
Fervidobacterium riparium
Pathway
frr03030
DNA replication
frr03430
Mismatch repair
frr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
frr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IB67_00815 (polC)
03430 Mismatch repair
IB67_00815 (polC)
03440 Homologous recombination
IB67_00815 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
frr03032
]
IB67_00815 (polC)
03400 DNA repair and recombination proteins [BR:
frr03400
]
IB67_00815 (polC)
Enzymes [BR:
frr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IB67_00815 (polC)
DNA replication proteins [BR:
frr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IB67_00815 (polC)
DNA repair and recombination proteins [BR:
frr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IB67_00815 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
DNA_pol_A_exo1
HHH_3
RNase_H_2
Zn_ribbon_8
CAF1
tRNA_anti-codon
DEDDh_C
DUF7130
DUF6483
DUF655
YhfH
T2SSK
HMBD
Motif
Other DBs
NCBI-ProteinID:
UXF00172
LinkDB
All DBs
Position
complement(174445..178656)
Genome browser
AA seq
1403 aa
AA seq
DB search
MYYSFDVSKNIRDIAEKIGINASGVIKRIAYDKKREIVSFFVSNFQGDIESFKDSLEEFL
QIAVEVVVDEEKDVQNEVESLKSYVLQQLNGSGKYVEHIEIEDKTLKIYALGEFAKAHIS
KRLTRVKSSLPFENYVIDVTAHENQQNDQAINDMKVGYDPDSQQLGVKTDGFSSVQKQIT
HATVKTGPTQSDESDMIEQFDKNLLGGLYSPSNMPPSNKKKFKLYGKVFKIDRPNPEVLN
VYITDKKDSLLGKVFNSKSQEIENKLSVGEWYIFSGMLTTDKFGTTFFKIDSVTEIPSLD
RIDNALEKRVELHAHTKMSDLDSVLDISEYIKTAKKWGWEAVAVTDHGNVQSIPELYELA
KSNGIKPIFGCEVYIANDPKKIMINEIEGNIDEATYVVLDLETTGLNPRLDEIMEIGAVK
TANGQIIDEFHTFVKPSKLKEKSLQITGITEEMLENAPDISQVIDRLSEFLNGAVIVAHN
ADFDVGFLKNTFSKFQRQFNPPYIDTLRLSQALLRSKLKSFSLDRLVDYFELGKFQHHRA
LDDARVTVKVFWKLVELLRKKSVNSFDRLNKLIEHINPLSKHPRHITVLVQNKTGLKNLY
RLVSKAHTETFFTVPQVLRSDLEKNREGLLIGTGCANSEVFELALSKDKSSLQEALKFYD
YIEIMPLDTISSEEFTKEEAKEAYRLLYEAGKELNIPVVMVSNAHFLDPEDIKARKVLLA
PQSNVEDAGANYFLRTTDEMLQAAMEIFEDETIAQEVVIKYPKKIVQMVEEIKPLEKKLH
PPKIEGAEEKLRSMTYERAYELYGNPLPELVEKRIERELNSIIGHGYAVLYMIAHLIVKK
AGEDGYVVGSRGSVGSSLVAHLVGITEVNPLPAHYRCPDCKHFELHEEVGSGYDLPDKRC
PKCGAKLEKAGQDIPFEVFMGFEGDKVPDIDLNFSGEYQERAHKFIEQLFGKSHVFRAGT
ISTIADRSAIGYVKSYMEDKNGNVVNSLNPAEQERLAMYVSGVKRTTGQHPGGLMIVPSD
YDIHDFTPYQHPANDKKSGVYTTHFAYESIHDDLVKLDALGHDDPTMIRLLYEYSGVDPM
KIPMDDKQTMSIFSSLKALKIDAQELGTDVGTIGIPEFGTDFVMGMLRDTRPKTFAELVR
ISGLSHGTDVWLGNAQTLIEKKTATLSEVISCRDDIMIYLIHKGLPPSNAFKIMENVRKG
KGLKDEEVQLMKEFDVPDWFIESCKKIKYLFPKAHAVAYVSMAFRIAYFKVHYPLAFYAA
FFSTKGDEFDAEFILRGKGAIKERLRELNNMMKKDVKEKNEEKVLQAALEMLLRGFEFKK
PDLKKSHHSRFIIEGKSLIIPFNKIHGIGDNVAKSIVEQRDIKMFTSVEDLMNRGKVTKA
QIEMLKRLGVLEELPETDQVTLF
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtactattccttcgatgtttcaaaaaatataagagatatagccgaaaagataggaata
aacgcttcaggggttataaagcgaatagcttacgacaaaaaacgtgaaatagtttcgttt
tttgtttctaattttcaaggagatatagaaagtttcaaggattctcttgaagaattctta
caaattgctgttgaagtagtcgtcgacgaggaaaaggatgttcaaaatgaagttgagagt
ttaaagagctacgtgctacaacaactaaatggttcaggtaaatacgtagagcacatagaa
atcgaagataagactttaaaaatatacgcgcttggagaattcgccaaggcgcatatttca
aaacgattgacgagggtaaaatcttctcttccatttgaaaactacgtcatcgatgtcacc
gctcatgaaaatcagcagaatgaccaagcgattaacgatatgaaagtcggttatgacccg
gatagtcaacagcttggcgtgaaaacagatggattttcaagtgttcaaaaacagattacc
catgcaactgttaagactggtccaactcagagtgacgagtcagacatgattgaacaattt
gataaaaacctgctcggcggtctgtactcaccctccaatatgcctccttcaaataagaag
aaattcaaactttatggaaaagtcttcaaaatcgacaggccaaaccccgaggttctaaat
gtatatatcaccgataagaaggactcgctacttggaaaagtgttcaactctaaatcacaa
gagattgaaaacaagctttcggttggtgaatggtacatcttcagcggaatgctcacaaca
gataaatttggaacgacattcttcaaaatcgacagcgttacggaaattccatctcttgac
agaatcgacaacgctttagaaaagagggtggaactacacgcacacacaaagatgagcgat
ctggacagcgtcttggatataagcgaatacataaagacggcaaagaaatggggatgggag
gctgttgccgttacagaccacggaaacgttcaaagcatcccagaactgtacgaacttgca
aaaagcaacggaataaaacctatattcggttgtgaagtttacatagcaaacgatccgaag
aagataatgattaacgaaatcgaagggaacatcgacgaggcaacgtacgtcgtgcttgac
cttgaaacaacaggcttgaacccaaggcttgatgaaataatggaaatcggcgcagtgaag
acggcgaatggccagataatcgatgaattccatacatttgtcaagccttctaagttgaag
gaaaaaagtttacaaataacaggtataacggaagaaatgctcgaaaacgcaccagatatt
tctcaagttatcgatagactttctgaatttctcaatggtgcagtaattgtggcgcacaac
gcagattttgacgtcggatttctcaaaaatacattttctaaatttcaaagacagttcaat
cctccatacattgacacactaagactctcgcaagctcttttgagaagtaaacttaaatcg
ttttctttggacagactcgtagactacttcgagctcggaaagttccaacaccaccgagca
cttgatgacgcgagggtaacggttaaagttttttggaaattggtagaactgcttaggaaa
aaatctgtaaattcatttgacaggctgaataagttgatagagcacatcaacccactttca
aaacacccacgacatattacggtgcttgtccagaacaagacgggtctgaagaacctttac
agattggtctctaaagcacatacagagacattcttcacagtacctcaggtcttgaggtct
gatcttgaaaagaacagagagggtttgctaataggtaccggatgtgcgaattcggaagtc
tttgaacttgcactgtcaaaggacaaatcctcgcttcaagaagctctcaaattctacgat
tacatcgaaataatgcctcttgatactatatcttcggaagaattcacgaaggaagaggcg
aaagaagcttacagattgttatatgaagcgggtaaagaactgaacattccagtggtcatg
gtttcaaatgcgcatttcttagatccggaagacataaaagcccgaaaggtattactcgca
ccccagagcaatgtggaagacgcaggtgcgaactatttcttacgcacaactgacgaaatg
ttgcaagctgcgatggagatattcgaagatgagacaatcgctcaagaagtagtcattaaa
tatccgaagaaaatagttcaaatggttgaagagataaagccgctcgagaagaaactccat
ccgccaaagatcgaaggtgcggaggagaaattgcgctctatgacatacgagcgggcatat
gagctgtatggaaatccactgccagaattagttgaaaaaagaatagaaagagaactgaac
agcatcatagggcatggttacgctgttctttacatgattgcgcacttgatagttaagaag
gcgggcgaagacggatacgtcgttgggtcccgtggttcagttggttcttccttagttgcg
catttggttggaatcacggaagtcaacccattgccagcacattacagatgtccagactgc
aaacatttcgagctgcacgaagaagtgggctctggatacgatttgccggacaaaagatgt
ccgaaatgtggtgcaaaacttgaaaaagctggtcaagatataccatttgaagtattcatg
ggatttgaaggagacaaagtccctgatatcgacttaaatttctccggcgaatatcaagaa
cgtgctcacaagttcattgaacaactctttggaaaatcacacgtcttccgcgccggtacg
ataagcacgatagcagacagaagtgcaattggatacgtgaaatcgtacatggaagacaag
aatggaaacgtagtaaattcattaaacccagccgaacaggaaagactggccatgtacgtt
agcggtgttaagagaacgacagggcagcatcccggtggtctgatgatagtcccgagcgac
tatgatattcacgacttcaccccttaccagcatccagcgaacgataagaaatcaggcgtt
tacacgacgcacttcgcctacgaatctatccatgatgacctcgtgaaactcgatgcactc
ggacatgatgatccgacgatgataagactcctgtacgaatacagcggtgtagatccaatg
aaaattccaatggacgacaaacagacgatgagcatattctcatcgcttaaggctttgaag
atagacgctcaagagcttggaacggacgttggaacaatcggaatacctgagttcggtacg
gacttcgtcatgggaatgttgagagataccagacccaagacatttgccgagcttgtgaga
atatctgggctttctcacggtactgacgtttggctcggcaatgctcaaacgttgatagaa
aagaaaacagcgacgctttcagaagtcatatcttgtagagatgatataatgatttatttg
attcataaagggttaccaccttcaaacgcgttcaagataatggaaaatgtaagaaaaggt
aaaggattaaaagatgaagaagtccagttgatgaaagaatttgacgtacctgattggttc
attgagtcttgtaaaaagattaagtacctgttcccgaaggcacatgcggttgcttatgtg
agcatggcgttcagaattgcctactttaaagtccactatccgcttgcgttttatgcagca
ttcttctcaacaaagggagatgagttcgacgccgaattcatacttagagggaagggagcc
ataaaagaacgtttgagagaactaaacaatatgatgaagaaagacgtaaaagagaaaaac
gaagaaaaagtgctccaagcagcccttgaaatgttactgaggggatttgaattcaaaaaa
ccggatttaaagaagagccaccactcaagatttataatcgaaggtaagagcttgataatc
ccgttcaacaaaattcacggcataggtgacaatgttgcaaaatcgatagttgagcaaagg
gatataaagatgtttacatcggtggaagacctaatgaaccgtggaaaggtgacaaaagca
caaattgaaatgctaaagagactcggagttttggaagaacttccggagactgaccaagta
acactgttctaa
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