Fervidobacterium riparium: IB67_03325
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Entry
IB67_03325 CDS
T08552
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
frr
Fervidobacterium riparium
Pathway
frr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IB67_03325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frr03019
]
IB67_03325
Messenger RNA biogenesis [BR:
frr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IB67_03325
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
LRIM1_dimer
Cas3_HD
T7_gp14
Spore_YhcN_YlaJ
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
UXF00619
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All DBs
Position
741355..742908
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AA seq
517 aa
AA seq
DB search
MDLIYIVIGLVIGIAAGYFFGSTIGRKKAEESIEKKLKAAKEDAETIVKNAEKEASEIKK
KMIIEAREEAHQIREEIEKERKRREEEIKALEERILKREEMLSKREEMLDKRELFVDNMK
IELETKAKELDEKEKEIEQRFIQLAGITHEQAREIVLQEAREKYEHEVAKIFVQIKSRYE
DEAEKHAKKVIADAIQRYAPEYTGEVTISTVMLPNDDMKGRLIGREGRNIRTFEKITGVD
LIIDDTPEVVTLSSFNPLRREIARRTIEKLVQDGRIHPARIEEMYEKAKVEVEKEIKEAG
QEAIITVGVGGLHPEIVKLLGRLKFRTSYGQNVLYHSMEVAQIAGLLASELGLNVDKAKR
GGLLHDIGKALDHEVEGSHTTIGAEILKRYGESDEIINMIMAHHGEEEPITPEAAIVTAA
DAISAARPGARREDVENYIKRLMKLEEIAKSYKYVENAYAIQAGREIRVIVQPDKTDDAT
IEKMAHDISVRIENELQYPGVLKVVVIREKRSVSYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggatttgatatacatcgttataggtttagttataggcattgcagcagggtatttcttt
ggttcaacaataggtaggaaaaaagcggaagaaagcatcgagaagaaattgaaagccgcc
aaagaagatgctgagactattgtaaagaacgctgaaaaagaagcttctgagattaagaag
aagatgatcatcgaggcacgagaagaagcacaccagatacgcgaagagatagaaaaagaa
cgaaagcgcagagaagaagaaattaaggcacttgaggaaagaattctaaagcgtgaagaa
atgctcagtaagcgtgaagaaatgctcgacaagcgcgagttatttgtagataacatgaag
attgaacttgaaactaaagctaaggaacttgatgaaaaagaaaaagaaatcgagcagaga
tttatacaacttgcaggtattactcacgaacaagcaagggaaattgttctccaagaagca
cgcgaaaagtacgaacacgaagttgcaaagatttttgtacagataaagtcaagatacgaa
gatgaagctgaaaaacatgcaaagaaagttattgcagatgcgattcaaagatatgcgccc
gagtacactggcgaggtcacgatcagcaccgttatgcttcctaacgatgatatgaaaggt
agattgatcggtagagaaggaaggaacataagaacgtttgagaaaatcactggtgttgat
ttgatcattgatgacacaccggaagttgttactctcagctcattcaatccacttaggaga
gaaatagcgagaagaaccatagagaaattagtacaagatggtaggatacatcctgcgaga
atagaagagatgtacgaaaaggcaaaagtggaagtagaaaaagagattaaagaagcaggt
caagaagcgataataactgttggtgttggtggactgcatccggaaattgttaaattactt
ggtaggttgaaattcaggacaagctacggtcagaacgtcctctatcattctatggaagtt
gctcagatcgcaggactgctcgcttccgagcttggtttgaacgttgacaaagcaaagcgc
ggtggtttattgcacgatatcggtaaggcgttagaccacgaagttgagggctcgcacacg
acaataggtgcagagattttaaagagatacggcgagtctgatgaaataatcaacatgata
atggcacaccacggagaagaagagcctattacaccggaagcagcgatagtcactgccgct
gatgctatatcggcagcaagacctggagcgcgaagagaagatgttgaaaactacataaag
aggctcatgaaacttgaagagatagcgaagagctacaagtacgttgagaatgcgtatgct
atccaagctggtagggagatcagagtaatcgttcagccagacaaaacagacgatgcaact
atagaaaaaatggcgcacgatatatctgtcaggatagaaaacgagttgcagtacccaggt
gttttgaaagtcgtagttataagagaaaagagatcagtctcttacgcaaaataa
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