Fervidobacterium riparium: IB67_04435
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Entry
IB67_04435 CDS
T08552
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
frr
Fervidobacterium riparium
Pathway
frr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IB67_04435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frr03019
]
IB67_04435
03016 Transfer RNA biogenesis [BR:
frr03016
]
IB67_04435
Enzymes [BR:
frr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IB67_04435
Messenger RNA biogenesis [BR:
frr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IB67_04435
Transfer RNA biogenesis [BR:
frr03016
]
Prokaryotic type
tRNA degradation factors
IB67_04435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
Motif
Other DBs
NCBI-ProteinID:
UXF00823
LinkDB
All DBs
Position
974277..976361
Genome browser
AA seq
694 aa
AA seq
DB search
MSVKEWKKVLFGKEWTFQHGKVAKQSAGSIWARFGDSVVLATVNVSDNIVEGIDFVPLTV
EFMEKFYAAGKIPGGFVKREGKPSESGILSSRLIDRPIRPLFPKRLRNEVQVIVTVLSVD
PDCPADVLGISAASLTLNISKIPFDGIAAGVQVGYVDGEFIVFPTVEQLERSKIDIVVAG
TKDAITMVEGEAKEVSEDEMLKALMVAHEAIKEIVAFQEEILKEFQIEKMPLPEPKYNVE
LVEKFAEYVDMSELEKRIFIRGKQERAEMADDYYESIVQKFFEDNNICEEEQEEYKIPLK
EKYDELSKKLMRKIIIERGMRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIV
TLGSPAEEQIIDTLVEEGTKRFILHYNFPPFSTGEVKPLRGTSRREIGHGHLAERAVKAI
IPSEDEFPYVIRVVSEILESNGSSSMATVCSASLALMDAGVPVKKHVAGVAMGLVLEGDK
SVVLTDILGLEDHWGDMDFKVAGTNDGITAFQMDCKVSGVSEELLRTALYQAKEARMFIL
GKLYETISEPRKELSPYAPRISWFYIDPSRSGELIGPGGRIIKSIIKMFDVEIALDDESG
KVTVSGVNAEKVNEAVEYIKNMFRDVNVGDVYDGKVTRVENYGIFVEIAPGKTGLTHASK
LGNMKPNAFKVGDRIKVEVVSIDETGRFQLRRVE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaagaatggaaaaaggtgctttttggtaaggaatggacattccaacacggt
aaagttgctaagcagtccgctggttctatttgggcgaggtttggtgacagtgttgttttg
gcaaccgtgaatgtttctgacaatattgttgagggtatcgactttgttcctttaaccgtt
gagtttatggagaagttctatgcagcaggtaagatacctggaggttttgttaaaagagaa
gggaagccttcagaaagcggaatcctttcttcaaggcttatagatagacctattaggcca
ctctttccaaagagactaagaaacgaagtccaagttattgtaactgttctatcggttgat
cctgattgtccagcagatgtacttggaatatctgccgcgtctcttacattaaatatttca
aaaataccatttgacggtattgccgccggtgtccaagttggttatgtcgatggtgagttc
atagtctttccgacagtcgaacaacttgaaagaagtaagatagatatcgtcgttgctgga
actaaagacgctatcacaatggttgaaggtgaagcaaaagaggtaagcgaggacgagatg
ctcaaagcactaatggttgcgcatgaagcaatcaaggaaattgtcgcgttccaagaggaa
attttgaaagagttccagattgagaaaatgcctcttccagagcccaaatacaacgttgag
ctcgtcgagaaattcgcagaatatgtagatatgagcgaacttgaaaagagaatatttatc
cgtgggaaacaggaacgagctgagatggctgacgattactatgagagtatagttcaaaaa
ttcttcgaggataacaatatatgcgaagaagaacaggaagaatacaaaataccactgaag
gaaaagtatgacgaactgtccaagaaacttatgagaaaaataattatcgaacgcggaatg
agagcagatgggagggggccaaaagacattagaccaattacatgtgaagttggtctctta
ccacgaacacatggttcgtctcttttcacgcgtggcgaaacccagagccttggtatagtc
acgctcggttctccggcagaagaacagataatcgatacgcttgttgaggaaggaactaaa
agatttattcttcactacaacttcccgccattttcaacaggcgaggtaaagccactcaga
ggtacaagccgaagagaaattgggcacgggcaccttgccgaacgcgctgtgaaagcaatt
atcccgtccgaagatgaattcccgtacgttataagggttgtatctgagatacttgaatcc
aacggttcatcgtcgatggcaacggtatgttccgcttcattagcattgatggatgcgggt
gttcctgttaagaaacatgttgctggagtcgcgatggggttggtacttgaaggcgataag
tctgttgtgcttacagatattctcgggcttgaagaccactggggagatatggattttaaa
gtcgcgggaacaaacgatggtataacagcatttcaaatggactgtaaagtctctggggtt
agcgaagagcttctcagaacggcactttaccaagcaaaagaagcaaggatgttcatcctt
ggtaaactctacgaaacaatatctgaaccaaggaaggagttatcaccatatgccccaaga
attagttggttctatattgacccttcaaggtctggagaattgatcggaccgggtggtagg
attataaaatcgataattaagatgtttgatgtagagatagctcttgatgacgagagtgga
aaagtaacagttagtggtgttaacgcagagaaagtcaatgaggccgtcgaatacattaaa
aacatgtttagagatgtgaatgttggtgatgtatacgatggaaaagtaacgcgcgttgaa
aactacggtatattcgtggaaatcgcaccgggtaaaacaggtttgactcatgcgagcaag
cttggtaatatgaaaccgaacgcgttcaaagttggcgacagaatcaaggtagaagttgta
agcatagatgagactggtcgttttcaactaaggagggttgaatga
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