KEGG   Fervidobacterium riparium: IB67_06305
Entry
IB67_06305        CDS       T08552                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
frr  Fervidobacterium riparium
Pathway
frr02024  Quorum sensing
frr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:frr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IB67_06305
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    IB67_06305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:frr03019]
    IB67_06305
   03036 Chromosome and associated proteins [BR:frr03036]
    IB67_06305
Messenger RNA biogenesis [BR:frr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     IB67_06305
Chromosome and associated proteins [BR:frr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    IB67_06305
SSDB
Motif
Pfam: Hfq Hfq_1 Spore_YhaL LSM EndoS_Ig-like
Other DBs
NCBI-ProteinID: UXF01161
LinkDB
Position
complement(1357662..1357958)
AA seq 98 aa
MPKEKAKEKFNLQDRFLNIVRTRKIEVKVYLVNGFQAKGIVRSFDNFTVLLESGKQQTLI
YKHAISTILPSEYIMLMKTEEEEQKEEQEAQESEGEQI
NT seq 297 nt   +upstreamnt  +downstreamnt
gtgccaaaggaaaaggcaaaggaaaagttcaaccttcaggacagatttttgaacattgtt
agaacaaggaagatagaagttaaagtttacttagttaacggatttcaggctaagggtatt
gttagatcattcgataatttcacggttttattggagagtggtaaacagcaaactttaatt
tacaaacatgccattagtacgattttgccttctgaatacataatgctaatgaagaccgaa
gaagaggaacagaaggaagaacaagaggctcaggaaagcgaaggcgaacagatataa

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