Fervidobacterium riparium: IB67_10500
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Entry
IB67_10500 CDS
T08552
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
frr
Fervidobacterium riparium
Pathway
frr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
frr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IB67_10500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
frr03400
]
IB67_10500
DNA repair and recombination proteins [BR:
frr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IB67_10500
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IB67_10500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
UvrA_DNA-bind
AAA_21
nSTAND1
AAA_16
AAA_29
RsgA_GTPase
AAA_23
DnaJ_CXXCXGXG
AAA_25
nSTAND3
RNA12
DUF6751
NMDAR2_C
CA109-like
Viral_helicase1
Ogg-HhH
DUF7575
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
UXF01913
LinkDB
All DBs
Position
2203984..2206761
Genome browser
AA seq
925 aa
AA seq
DB search
MDKLIVKGARVHNLKNIDVVIPKNKLVVITGLSGSGKSSLAMDTIFIEGQRRYLESLSTY
ARQFIGELKKPDVDSIEGLSPTIAIDQKSVSHNPRSTVGTVTEIYDYLRVLYAQIGVPHC
PNCGSELQKMSVDEIVSHVVKHFQGKRVLILSPIAREKKGTFKEEFESFLNRGFTRVEVD
GQVYRLEEVPELNKNVRHNVSLVIDRIEVSGEDTHRLFQSIELALKEGNGFVLVRSESDE
HLYSEKLSCLSCGFSMPEINPKLFSFNAPYGACPDCHGLGFKLEVDEDSLFEEELPIIQG
LRIGHKADGWLPRRLERIVREYGGNVDKPFFEQPLEVKEAVLYGTEYFEGIVRLVKERYE
EYTSEEMREWIVDNFFVERTCQTCKGKRLRREALSVTIDNLSIIDFTELPISKELKIIRN
LPEKITPKQYEAIRELLQEIEKRLDFLERVGLGYLSLSRNVRTLSGGEAQRIRLATQIGS
KLTGVIYVLDEPTIGLHQRDNSKLISMLKELRDLGNTVIVVEHDEEVIESADYIVDIGPR
AGVNGGNVVFQGPVTEILKSESSLTGKYLSGRLKIEVPKERRRGNGNHIRIVGARHNNLK
DLTVEFPLGTFICVTGVSGSGKSSLIIDTLYPAISNKLHRTRHEVGEHDRIEGLENIDKI
IAIDQSPIGRTPRSNPATYTKVFDAIRELFAMTPEAKARGYDKGRFSFNVKGGRCEACTG
QGVVKIEMMFLPEVYVECEVCKGKRYNSETLEVTYKGKNIADVLDMTVEEALEFFKNIPT
IKDTLQVLYDVGLGYIKLGQPATTLSGGEAQRVKLASELRKKATGRTLYILDEPTVGLHF
EDVKRLIEVLNRLVDKGNTVIVIEHNLDVIKSADYIIDLGPEGGDAGGYLVASGTPEEVA
KVQNSWTGLYLKKILNSAKMGEEAS
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggataaattgatagttaagggtgcaagagtacacaatttaaagaatatagatgttgtg
attccaaagaacaagctcgttgtaattaccgggctttccggttctggcaagagctctttg
gcaatggataccatctttatagaaggacaaaggcgatatttggagagtctatcaacgtac
gcgaggcagttcataggcgaattgaaaaagccagacgttgatagcattgaagggctttct
ccaacaattgcgatagaccaaaagagcgtatctcacaacccgaggtcgacagttggaacc
gtaacagagatatacgattatctgagggtactctacgcacaaattggagtacctcattgt
ccaaattgcggtagtgagcttcaaaagatgtctgttgatgagatagtttcgcatgttgtt
aagcattttcaaggcaagagagtgctgatactgtctccaatcgctcgagaaaagaagggg
acttttaaggaagaattcgaaagcttcctcaacagagggttcacacgcgtagaggtagac
gggcaagtttacaggctcgaggaggtacccgagctcaataaaaacgtcaggcacaatgtg
agtcttgtgatagatagaattgaagtttcaggagaagacacacataggctatttcaatcg
atcgagcttgcgttaaaagagggaaatggctttgttttggttagatccgaaagcgatgag
catctgtattctgagaaactttcatgtctttcttgcggattttcgatgccggagatcaat
ccaaagctcttttcttttaacgctccatacggagcgtgtcctgactgtcacgggctcggt
tttaagcttgaggtcgatgaggattctctattcgaagaggaacttccaatcattcagggt
ttgaggatcggccacaaagctgatggatggctacccagaaggctggaacgcatcgtcaga
gaatacggcggaaatgtggataaacccttctttgaacagccattagaggttaaagaggct
gtgctttacggcactgaatatttcgaaggaatcgttagacttgttaaagagaggtatgaa
gagtacacatctgaagagatgcgcgagtggatcgttgacaatttcttcgttgagcgcact
tgccagacgtgcaaaggcaaaaggcttagaagggaagcgttgagcgttacaatcgataac
ttaagcattatcgatttcaccgaactgccgatatcaaaagagctaaaaataatcaggaat
ctgcctgaaaaaattacgccaaagcagtatgaggcaataagggaactattacaagaaatc
gaaaagcgccttgatttccttgaacgcgtaggacttgggtatcttagtctttcgagaaat
gtgagaactctttcaggtggtgaggcgcagaggataaggctcgcgacacagataggctca
aagttaaccggagtgatatacgttttggacgaaccaacaatcgggttgcatcaaagagat
aatagtaaattgatttcaatgcttaaagaattgcgggaccttggcaacacggttatagtt
gtggagcacgatgaggaagtaatagagagtgcagactatattgtcgacataggtccgaga
gctggtgtgaacggcggaaatgtcgtgttccaaggtcctgtcacggagatattgaagagt
gaaagttcgttgaccggcaagtatctttctggaaggttgaagatagaggttccaaaggaa
aggcggagaggaaacggtaatcacatacgcatagtaggggcaaggcacaacaatttgaaa
gatttgaccgtcgagttcccgctcggaactttcatctgcgtgactggggtgagcggttct
gggaagagctctttgataatcgatacgctttacccagcaatctccaataagctccacagg
acaaggcacgaggttggagaacacgacaggatagaagggctcgagaatatagataagatt
attgcgatagaccagtcgccaatcggcagaacccctcgcagcaacccagcaacatacacg
aaggttttcgacgctataagagagcttttcgcgatgacaccagaggcaaaagcaagagga
tacgataaaggacggttcagtttcaacgttaaaggtggcaggtgcgaggcttgtacaggt
cagggcgttgtgaagatcgagatgatgttcctgcccgaagtttacgttgaatgtgaagtt
tgtaaaggcaaaagatacaattcggaaacacttgaggtcacgtataagggaaagaacatc
gcagatgtcctcgatatgacagtcgaagaggcactcgagttcttcaagaacatacccaca
ataaaagacacactacaggtgctttatgatgtgggactcggatatatcaaactcggacag
cctgctacaactctctccggtggtgaggcgcagcgcgttaagctcgcttctgagttgagg
aagaaagcgactggaagaacgctttatatattggacgaaccaacagttgggctacacttt
gaagatgtcaaaaggctcattgaggttctaaataggctcgttgataaaggaaacaccgta
attgttatcgagcataatcttgacgtaataaagtctgctgattatataatcgacctcgga
cctgagggtggagatgctggcggctatttagtagcgtcaggcacgcccgaagaggtcgcg
aaagtccagaattcttggactgggctttacttgaaaaagattttgaattctgcgaagatg
ggggaagaggcttcatga
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