Falco rusticolus (gyrfalcon): 119143032
Help
Entry
119143032 CDS
T11606
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
frs Falco rusticolus (gyrfalcon)
Pathway
frs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
frs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119143032 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frs03021
]
119143032 (PCF11)
03019 Messenger RNA biogenesis [BR:
frs03019
]
119143032 (PCF11)
Transcription machinery [BR:
frs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119143032 (PCF11)
Messenger RNA biogenesis [BR:
frs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119143032 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
119143032
NCBI-ProteinID:
XP_037232662
LinkDB
All DBs
Position
2:complement(8290892..8311538)
Genome browser
AA seq
1713 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHMSPTPHMTVKSPHQTAVQSEKNKPSPSPPLHDMKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPLNTTGQSDTKANRTTQAEKQNSTKPEKLKASEKTQKKELDQSE
AKPKSPSPLKNKLPNTKDTKTQECESTKVSEISKRDPRLKRHLQDKSEGKDEEVKEKRRN
TEKKEKEEHKTCEHRPAGSRNKVINGAVQKQDTTTEDSEKQGGKQGRSSNRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRPIGPKQSHVEEGTPVARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQETASQHSTKAAPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWPADKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLASGEITQDEFLMVAHQIRQLFQYQEGKHRCNIWDSPAEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLPGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFADNVPSLESRRRLEEQNATKGARGSKNFDPYDSWGESD
EFRDALRQQGKSTTEFQKIDGDAICRFDNREDRQLLGQAGVREEARSPFSERFKRARYDD
PEKAPFPEGSGSRFGGIEAKQRISALMEDRPLFDGTPRQAAARVGVDGQGSPFVDGPAAG
SSSRIDGPPGQAAMRFEGSLLGTGVSQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFDGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGSHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQVQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEVSPYGQGGPFVEHPGQSYNGPSHGM
QFQRPDLFDASPGPNFNGPAGPGAQNFPLRTAGHYFDEKGLQGPQYGNFNNMPMGSNQVS
LMSAQPGPYGQGQQYLPNPGSFVQNPTGALPHSYPDNHLGQLDVNELFAKLLSTGILKLS
KTDSTSAQVNETSAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCY
SCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERA
KSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLK
NAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPAENPLNIVLNIVKQETQESCDSPKVK
EEPDDTPTACAEESTPASTDIKTEPDESAQTEV
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaatatgctgacc
atcctggctgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatcttctgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ttgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaatcacctcatcagactgctgtgcaatccgaaaaaaacaaaccatcc
ccaagtcctccacttcatgacatgaaaatagtaaatagggatcctcgacttaacaggatg
gctcaacattcttctcatgctaaagatcaatctcacaggaaagaatttccactgaacaca
actggtcagtctgataccaaggcaaacagaacaacacaggctgaaaaacagaactcaaca
aagccagaaaaattgaaagcaagtgaaaaaacacagaagaaagagcttgaccagtcagaa
gcaaaacctaaatcaccatcccctttgaaaaataagctgcccaatactaaagatactaaa
acccaggaatgtgaaagcacaaaagtatctgaaatcagtaaacgggatccaagactgaaa
agacatcttcaagataagtcagagggcaaagacgaagaggtgaaagaaaaaaggagaaat
acagagaaaaaagaaaaagaggaacataagacgtgtgaacacaggccagcaggcagcaga
aataaagtaattaatggtgctgttcagaaacaagacacgactacagaagactcagaaaaa
cagggtggaaaacaagggagatcaagtaatagaaaacggtcacgatcacgctctcctaag
gcacggtcaccatctacgcattctccgaaaagacgagagaggagatcacccaagagacga
cttaggagtttatctcctacttcatcaactcctaaaattggaaagatacgtccaataggc
cctaagcagtctcatgttgaagaaggcacaccagtggcaagagacgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgagatccaaggagagtgaaaaaagcccaggaagac
aggccccaagaaacagcaagccagcattctacaaaagctgctcctgatccaaaggagaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacac
cgggaaaactggcctgctgataaaggaattttatcaccccgagcaccaaagcagcagcat
cggttaagtgtggatgccaatttacagattcccaaagagttgacatctgcaagcaagaga
gaattacttaagaaggccaatgaacgcttagcatctggtgaaataacacaagatgagttc
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcatagatgt
aacatctgggatagccctgcagaggaaaaatgtggtttgaaaaagaaacctcttctgtcg
gatgcagagctaacatattatgaacataaggctaaactgaaaagaacacaagttcagcat
tcgttatcaaggcttgatctcttggatccggatgatattttggattatcatatacctgat
gcactgcttcctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagtttgac
agaaaagagccatttggagaaagatcaaggagacactctcctgtaagtggcactaataga
ccttttgctgataacgtcccatcacttgagagtcgacgaagacttgaggaacagaatgct
actaaaggagcaagaggttctaagaactttgatccttatgacagctggggagaatcagat
gaatttagagatgctctcagacaacaggggaagagcacaacagagttccagaaaatagat
ggtgatgcaatctgcagatttgataatcgtgaagacagacagcttcttgggcaagctggt
gttcgagaagaggcaagatcaccattcagtgaacgtttcaaaagagctaggtatgatgat
ccggagaaagcaccatttccggaaggttcaggatcaagatttggaggcattgaagcaaag
cagaggataagtgcactaatggaagacagacctctatttgatgggacacctagacaggct
gctgcaagggttggggtagatggacaaggaagtccttttgttgatggtcccgctgctggt
tcaagttccagaattgatgggccacctggacaggctgctatgagatttgaggggtctttg
ctggggacaggtgtatctcagtttgatggaccgctggcaggagcagggggagctggagcc
ctaagatttgatggcccgccagggcagctggcaggagccctaaggtttgaaggaccacca
ggacaggttggtggaggaggcccactgaggtttgagggacctcttgggcagataggtggg
ccattgcggtttgaggggcctgcagggcagcctgtaggtggtcctagatttgaaggacct
ggagttggtctgaggtttgagggtccccgtggtcagccttcaggtggcctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcagccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgat
gggccacacttgcagccattggggccacatggtcaacctggaggtggcctaagatttgag
gggccacatggtcagcctatggggccacatggaccatcaggtggcgggctcaggtttgag
gggtcacatggaccgtcaggtggtgggctcagattggaaggaccacatggtcagccaggt
gtaggtccaaggctgattgatggaccagtacaccagggggctggtggacttcgatttgat
ggtcctctgggtcgggctggtccaaggtttgatggttgtcatgcagctggatttgatggt
cagcctggacagctgtctctcttgcaaagatttgatgggattcatggacagcctggccca
agatttgaaagggcacctgggcaacaggtgcaaccacgatttgatacagccatacctcaa
agatttgatggaccgcaccagccagcctctagatttgacttgccccttggccttcaaggt
gcacgtttcgaaaatgtagctaaccatcctgcctcaagactagaagtgtcaccgtatgga
caaggtggtccatttgttgaacatcccggccagagctacaatggaccatctcacgggatg
cagttccagagacctgatctctttgatgcttcgcctggaccaaacttcaatgggccagct
ggcccaggagcacagaatttcccgttgagaacagctggacattactttgatgaaaaaggt
cttcagggtcctcaatatggaaacttcaataatatgccaatgggaagtaatcaggtttct
ctcatgtctgctcaaccagggccttatggacaaggtcaacagtatttgccaaatcctgga
agttttgttcagaaccctacaggagcccttccacattcatatcctgataaccaccttgga
cagcttgatgtcaatgaattgtttgctaaactgctgtcaaccgggatcctcaaactgtca
aaaactgattccacttcagcacaagtgaatgaaacatcagcccagccagctgctgaagag
gaagatgatgaccagaacgaagatcaaaatgttccagacctcactaacttcacagttgaa
gaacttagacagcgctatgatagtgttataaatcgactgtacactggaattcagtgttac
tcatgtggaatgagattcactacttcacagacggatgtttatgcagatcatttggactgg
cattatcgtcagaacaggacagaaaaagatgttagcagaaaaattacacacagaagatgg
tactacagtttaacagactggattgaatttgaagaaatagctgatctagaggagcgtgca
aaaagccagttctttgaaaaagctcacgaagaggttgttttgaagacacaagaagctgca
aaagagaaggaatttcagagtgtccctgctgggccagctggagcagttgaaagctgtgaa
atttgtcaagagcaatttgaacagtattgggacgaggaagaggaagagtggcacctgaag
aatgctatcagagtagatgaaaagatttaccatccatcttgctatgaagattaccaaaat
acatcatcatttgattgcacaccatctcccagcaagactccggcagaaaatccactaaat
atagtgttgaacattgttaaacaagaaacacaggagtcctgtgactcacctaaagtcaaa
gaagaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagat
ataaaaacagaacccgatgagtctgctcaaactgaggtatga
DBGET
integrated database retrieval system
