Francisella salina: F7308_0644
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Entry
F7308_0644 CDS
T01560
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
frt
Francisella salina
Pathway
frt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
frt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F7308_0644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frt03021
]
F7308_0644
03400 DNA repair and recombination proteins [BR:
frt03400
]
F7308_0644
Enzymes [BR:
frt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F7308_0644
Transcription machinery [BR:
frt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F7308_0644
DNA repair and recombination proteins [BR:
frt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F7308_0644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEI35571
LinkDB
All DBs
Position
648321..652574
Genome browser
AA seq
1417 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEKASVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDDEYAEALENYGYEFEASMGA
EAIRDLLSDTDLETEIETLQAEYEESKSTAKREKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSNYDDVSRAYNSGTI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
RIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPETKEAKVEEAEKEIK
HITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVMVNGENKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGVVLLEAGTLLDENLVEIFDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKDGQNIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKGVEIGDVIATWDPHA
QPLITDVAGKVVLDDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKIVDEKG
NELKSISLAVGAVLNVADDSVLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGVVRLGNRDTKEKQRIEILDKNGHITEEILLPKSRHLVVFDGEPVSKGDVLAD
GPTDPHDLLKYKGLEAFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKATILEEGDS
KFVKNESIELVRILEENDRLSKEDKSLVEYELTLMGITRSSLSTESFLSAASFQETTRVL
TEASIHSQVDQLRGLKENVLIGRLIPTGTGLAVRKESNKIEKMREELGVEDNTLFTDASS
FDTEESSSFENQIEKEDKDINEDIEESLRNALESLDF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaattacaatagtaaaaagtttgatattattaaaata
tctttagcatctcctgaggtcattcgttcgtggtctcacggtgaagttaaaaaaccagaa
actataaattatagaacatttaagcctgaaagagatggattattctgtgcaaaaatcttc
ggcccaattaaagattatgagtgtctatgcggtaagtataagagacttaagcaccgaggc
gtagtatgtgagcgttgtggtgttgaggtagaaaaagcttctgtccgtagagaaagaatg
ggacatatagatttggtatgtcctgtagtacatatttggtatttgaaatctttaccttct
agaattggcttattccttgatatgccattgaagaatgttgagaaagttttatatttcgag
tcttatatagttacagatcccggtatgactccgttagagaagaagcagcttcttacggat
gatgagtacgcagaagctttagagaactatggttatgagtttgaagcatctatgggtgca
gaagctattagagatctattatcagatactgatcttgaaactgagattgagactttacaa
gctgaatatgaagaaagtaagtctacagccaaaagagaaaaagcaatcaagagattgaga
cttcttgaaactttccaagcatcaggtaacaagccagagtggatggtaatgacagtatta
ccagttttaccgccagatttaagaccattagttccaattgaaggtggtagatttgcaact
tctgatcttaatgacttgtatcgtagagtaattaatagaaacaatagacttaaaaaactg
ttggatttaaatgctccagatatcattgttagaaatgaaaagagaatgttgcaagaagct
gttgatgcattattggataatggtagacgtggtagagcagtaacaggctctaataagaga
cctcttaaatcattagcagatatgattaaaggtaagcaaggacgtttccgtcagaactta
cttggtaagcgtgtagattactctggtcgttctgtgattacagtaggtccatctctaaga
ttgcatgagtgtggtttacctaagaagatggcattagaactatttaagccttttgtatac
tctaagttaagattaggtggttacgcaacaactattaagcaagctaagagaatggttgag
cttgaagaagcagttgtatgggatatcttagaagttgttatcaatgaacatccagtttta
ttaaaccgtgctcctacacttcatagacttggtattcaagcttttgaacctaagctaatt
gaaggtaaggcgatacagctacatcctttggtttgtgcggcatttaacgccgatttcgat
ggtgaccaaatggcagtccatgtaccattaactgtagagtctcaattagaagctagagtg
ttgatgatgtctacaaataacatcttatctccagcgtctggtcagccaattattactcct
actcaagatattgtactaggtttgtactatatcactagagagaaagagggtgctcgaggt
gaaggtaaattattctcaaactatgatgacgttagtagagcatataactctggcactata
gatatccatgctaaaatcaagcttagaatagatagacaagtttttgatactaaaggtaat
acttataacgagaaaggagttgtgaatactactgttggtagagcattacttcttaatata
ttgcctgaaggattatcattctcgctattaaataaagtgcttgttaagaaagaaatttct
agaatcattaaccaggcatttagagtgttaggtggcaaagcaactgtagttttagctgat
aaactaatgtatgcaggtttcaaatactcaacattatcaggtgtttctgtaggtgttgat
gatatgacaatacctgaaactaaagaagctaaagtagaagaagcagaaaaagaaattaag
catattacagagcaatatcagtcatcattaattacagaaaatgagagatacaacaatatc
attaatatttggagcaaaacttctgatgaagttggtgcttcaatgatggatgctatatct
aaagatactgtaatggtgaatggtgagaataaagaaattgaatcgtttaactctgtatat
atgatggcaaaatcaggtgcaaggggttcttataaccagatgagacagcttgcaggtatg
cgtggtctaatggctaagccagatggaacgatgattgaaactgctattacagcgaacttt
agagaaggtttgtcagtattgcagtactttacatctactcacggtgctcgtaaaggtttg
gccgatacagcattgaagacggctaacgctggttacttaactcgtagacttgtggatgtt
gctcaagatttagttgttatcgaagaagattgtggtactgatgatggtttaatgttttca
gctatcgttgaagatggtgaagttaaagttcctttagtagagagagctttaggtagaaca
ttagctgctgatgttgtgactgaaaaaggagtagttctattagaagctggtactctactt
gatgaaaatcttgttgagatatttgatgataatggtattgacatgatcaaggttagatct
ccaattacatgtaaaactcgtagaggcttatgtgctaaatgttatggtcgtgatcttgct
cgtgagagaaaggttaatgtaggtgaatctgtcggtgtaattgctgctcagtcaattggt
gagccaggtacacagcttacgatgagaacgttccatactggtggtgcagcatcattaggc
attacagtatcagatatcaaagttaaaactgctggtaagattaagttcaaaaacatcaga
acagttacaaataaagatggccaaaatatagttatatcaagagctggtgaaattatagtt
tctgatactatgggccgtgttagagaacaacataaaatccctatgggtgcggttgttcct
ttagcaagtggcaagggtgttgagattggcgatgttattgctacttgggatccgcatgct
caaccattgattacagatgttgctggtaaagtagttttagatgatgttattgatggtatc
acatcaaagcatacatatgatgatctaacaggtcagcaaactattgagataacttcaata
tctcaaagaacaacatctaagaacttaaaacctgtagttaagattgttgatgaaaaaggt
aatgagcttaaatcaatttcattagctgtaggtgctgtattgaatgttgctgatgattcg
gttctagaggttggtgatgtggttgctaagattcctttagaagggtctaagaacaaggat
attacaggtggtcttccgcgtgttgctgaacttttcgaagctagacgtccaaaagatgct
gctatattatcaccttgtgatggtgtggttagattgggtaatagagatactaaagagaag
caaagaattgaaatcttagataagaatggtcatattacagaagaaatactgttacctaag
tctagacatttggttgtttttgatggtgaaccagtatcaaaaggtgatgttctggcggat
ggacctactgatccacatgaccttctaaagtataaggggcttgaggcgtttgctgattat
atcttaattgaggctcagtctgtatatcgtatgcaaggtgttgtaattaatgataagcat
attgagactattgtcagacaaatgttaagaaaagcgacaatacttgaggaaggtgatagt
aagtttgtcaaaaatgaaagtattgaactagtaagaatacttgaagaaaatgacagatta
tctaaagaggataaatcattggttgagtatgaacttactttaatgggtattactcgatca
tctttatctacagagtcgttcttgtctgctgcatcattccaagaaacgactagagtatta
acagaggcttcaatacattctcaagttgatcagttaagaggacttaaagaaaatgttctt
attggtaggttgattccgacgggtactggcttagcagttagaaaagagtctaataagatt
gagaagatgagagaagagcttggtgtcgaagataatacactgtttacagatgcatcatca
tttgacactgaagagtcttcttcgtttgagaatcaaattgaaaaagaagacaaggatatc
aatgaagatattgaagagtcattgagaaacgccttggaatctttagacttctaa
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