Francisella salina: F7308_1076
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Entry
F7308_1076 CDS
T01560
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
frt
Francisella salina
Pathway
frt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7308_1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frt03019
]
F7308_1076
03009 Ribosome biogenesis [BR:
frt03009
]
F7308_1076
Enzymes [BR:
frt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F7308_1076
Messenger RNA biogenesis [BR:
frt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F7308_1076
Ribosome biogenesis [BR:
frt03009
]
Prokaryotic type
rRNA processing factors
F7308_1076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Flu_C_NS1
Motif
Other DBs
NCBI-ProteinID:
AEI36003
UniProt:
F8GC86
LinkDB
All DBs
Position
complement(1109370..1112045)
Genome browser
AA seq
891 aa
AA seq
DB search
MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEDKNGFLPFKEVSEYYLKDVPNGENIASLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPDGGGISRRVEGEDREKLKKYLKDLNIPKSMSVIARTACVECSFEELKHD
FDNLVELWSSIFKAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFADVKRQ
LGLLRQSFDTNKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKIMLIPNFNMESPKF
QMQRIWGASYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKTTSNSQNQAPTENKKAQ
DNIANKNTQNTKKETIKEEPKKKSFLSKLLGKLGGNAEDTTIEKTKPQDKQHKNKGQKPQ
HHKSQNNRQERDNSQRNDRKNDNKNDRGDNKNNNKGQKPQHHKSQDNRQERDNGQRNDRK
NNDNKNDRNKNDRNKNRSSDKFDKKSNNRSNNRSNNLNLNNAEEVVDITQLKYQNQTAEK
TDNIKKVISKNPEEFVSVMVKDVLENYDSLKDDGATKVATQERAKTNKYLKFDTVSVDKE
ISTLKAAQQASNVEADNKKIIETDNVQEEQVKETVEVVDKVVVKEEQPKRIKKIDKSNET
SEQNDLKKEKPKAVKNNKKEKAVEKANKQDQIKPEYINYSPAIDFESQTII
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatactaataaatagtaaaagtagtgaagaaacaagaattgctactctggat
aacggaaaacttattgatctagatatcgaaaacgtagatagagaacaaaagaaagctaac
atttacaaaggttacatatctagaattgaacctagcttaaatgctatatttgttaactat
ggtgaggataaaaatggttttttaccatttaaagaagtttctgagtattatctaaaagat
gtgccaaatggtgaaaatatagcatctcttctctctgaaggacaagaattaatcgtacag
attgacaaagaagagcgtggtgataaaggtgctgcactaactacatttatcacactagct
ggttcatacatggttttactgccaaacaacccagatggtggcggaatttctcgtcgtgtt
gaaggtgaagatagagagaaattaaaaaaatatctaaaggacttaaatatccctaaaagt
atgagcgtaatcgcaagaactgcttgcgtagaatgctcatttgaagaattaaagcatgac
ttcgacaatctagttgaattatggagctcaatattcaaggcttatcacaaaatcaaaaag
cctgccctacttcacaaagagagcgacataattgtaagaacagttagagatcatctaaaa
gaagatgttaaagaaattattgtagactctaaggaatgttttgcagatgttaaaagacaa
cttggtctacttagacaaagctttgacacaaacaaggttaaactgtacaacgaagagcta
ccaatatttgctcaatttggtatcgatcaacagatagaaaatgcatacaagagagagatt
agattaccttctggtggatctattgttattgatactacagaagctttagtcgcaattgat
gttaactcatctcgagctaacaaagcagaggatgtagaaactactgctttcaaaacaaac
ttagaagctgctgaagaagttgctcgtcaacttagaattagagacctcggaggacttgtt
atagttgactttatcgacatgtcattctatccaaatagaaagcaagttgaagaaaagtta
atggaagctctacagcaagataaagcacgtatccaaatgtctcgtatatctaaacttgga
cttgttgagatctctagacaacgtttgagttcatcaatcaacgagagtgtaatgcaaaag
tgtcctcgttgtgacggccatggctttattaaaactactcaagctacagcacttactatc
ttacgtaaaattagagcggaagctatcaaagaagatactaatgaaatacgtgtccaagta
cctgtggatatagctgcatatatcctaaatgagaaaagagatagtattgttgagattgaa
agaatctctgaagttaaaataatgctaatccctaacttcaacatggaatctccaaaattt
caaatgcaaagaatctggggagcaagctacaagtctaatcgtacaagctctgatttgata
gaagatgtatacaatgttgaaattcctaaagcaggtaaaaagaaagtagctgctgtagag
ctaagtaagacaacatcaaacagtcaaaatcaagctccgacggagaataaaaaagcccaa
gacaatatagctaataaaaatactcagaacactaaaaaagagactatcaaagaagaacca
aagaaaaaaagttttttgagtaaattgctaggtaaacttggtggtaatgctgaagatacg
actattgagaagactaagcctcaggataaacaacacaaaaataaaggtcaaaagcctcaa
caccataaatctcaaaataacagacaagaaagagataacagtcaacgtaatgaccgtaaa
aacgataacaaaaacgatcgtggtgataataaaaataataacaaaggtcaaaagcctcaa
catcataagtctcaagataatagacaagaaagagataacggccaacgcaatgaccgtaaa
aataatgacaacaagaatgatcgcaataagaatgatcgtaacaaaaatagatcaagtgat
aaatttgataaaaagtcaaataaccgtagcaataacagaagcaataacttaaatcttaat
aatgcagaagaagttgtcgatattactcagctcaaatatcaaaatcaaacagctgaaaaa
actgataacatcaaaaaagtaatatctaaaaaccctgaagagttcgtctctgttatggtt
aaagatgttttagaaaattatgatagtctaaaagatgatggagctactaaggttgctact
caggaaagagctaaaacaaataaatatctaaaatttgatactgtttctgtagataaagaa
ataagtactttaaaagctgcacaacaagctagtaatgtagaagctgataataaaaaaatt
atagagactgacaatgttcaagaagagcaagtaaaagaaacagttgaagtagtagataaa
gttgtagtcaaagaggagcagccaaaaagaataaaaaaaatagataaaagtaatgaaact
tctgaacaaaatgatcttaaaaaagaaaagcctaaagctgtaaaaaataataaaaaagag
aaagcggtagaaaaagctaataaacaggatcaaattaagccagaatatataaattactct
ccagctattgattttgagtctcagacaataatctaa
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