Francisella salina: F7308_1486
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Entry
F7308_1486 CDS
T01560
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
frt
Francisella salina
Pathway
frt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7308_1486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frt03019
]
F7308_1486
03009 Ribosome biogenesis [BR:
frt03009
]
F7308_1486
Enzymes [BR:
frt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F7308_1486
Messenger RNA biogenesis [BR:
frt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F7308_1486
Ribosome biogenesis [BR:
frt03009
]
Prokaryotic type
rRNA helicases
F7308_1486
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEI36411
LinkDB
All DBs
Position
complement(1508353..1510071)
Genome browser
AA seq
572 aa
AA seq
DB search
MNSETKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDMESRDRAPQVLVLAPTRELAIQVAEQFEAFAKNIPNLDVTCIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHV
SDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFMVIKGFRKIDALD
RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSD
ILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKDLAQSRIDHFKTRVASALDKNKSLDKYKEIITGIRDELEL
DSDELLAVLTLLAQGKKSFFPREIQARDDRSQRDRNSRNNPRDGRRNDRFERRGERGDRN
NRFERSDRKPRRAVNIDLTTYKLEVGHDNDVQPRNIVGAIANEGNIDSKHICNISIQKDH
TLVDLPANLSPKVISHLRKVWVAGKKLNLTAR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttgggctgaatcaagatattatagac
actgttataaaattaggatacgaaaatccaacacctattcaacagtatgctattccatat
atcttatcgggtagagatgtgcttggtcaagcacagacgggtacaggtaaaacagcagct
tttgcattacctttaataaacaatatggatatggaatctcgagatagagctcctcaagta
ttagtacttgctccaacaagagaactagctatacaagtagcagaacagtttgaggctttt
gctaaaaatataccaaacctagatgttacatgtatctacggtggtcaagaatatggttct
caaataagagcacttaagcaaggagtaaaagttgtagttggtactactggtcgtgtgatg
gatcacatcgaaaaaggtacattacaactagataatttaagagcattagtattagatgaa
gcagatgaaatgctcagaatgggctttattgatgatgttagatacgttctaagtcatgta
tcagatgagtgtcagagattgcttttctcagcgactattcctactgatatagcggatatt
atccaagaatatctaagaaatccttgtaagatacaagtaaaggcaaaaacaaaaacagca
aatactgtgacacagaagttcatggttattaaaggctttagaaaaatagatgctttagat
agattgcttgaagttgaagaaactgacggagttattatatttgttaaaactaaaacaagt
accatagaagtagctgataatctaaaggctcttggttataaagtcgcagcgataaatggt
gatatgcaacaatctcagcgtgagtatatagttgatcaattcagaagtgctaaatctgat
atcttagtggctactgatgtagttgccagaggtatagaccttgagcgtattagtcatgtg
attaattatgatatgccaaatgatacagatacttatgtacatagaattggtcgtacaggt
agagcaggtcgtgaaggtacatctatctctctagttccactaaaagaaatgagatttttg
cgtactttagagagatttacaggctctccaatgcaagaagtatttatgccaagtgccaaa
gatttagctcaaagtagaatcgatcacttcaaaactagagtcgcttcagcattagataaa
aacaagtctttggataaatacaaagaaattatcacgggtattcgcgatgaattagagtta
gattcagatgaacttctagcagtacttactttattagcacaaggtaagaagtcgtttttc
ccaagagaaattcaagctagagatgacagatctcaaagagataggaattctagaaataat
cctagagatggtcgtagaaatgatagatttgagcgtagaggtgagcgcggtgatagaaat
aaccgttttgaaagatcagatagaaaacctcgtagagctgtaaatattgatttgacgaca
tataaacttgaagttggtcacgataatgatgttcagcctagaaatattgttggtgcaata
gctaatgagggaaatattgatagtaagcatatttgtaatatttctattcaaaaagatcat
acattagtagatcttccagctaacttatctccaaaagttatcagtcatctcagaaaagtt
tgggttgcaggtaaaaaattaaatcttacagctagataa
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