Fructobacillus americanaquae: M3M36_02455
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Entry
M3M36_02455 CDS
T08234
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fru
Fructobacillus americanaquae
Pathway
fru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M36_02455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fru03019
]
M3M36_02455
03009 Ribosome biogenesis [BR:
fru03009
]
M3M36_02455
Enzymes [BR:
fru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M3M36_02455
Messenger RNA biogenesis [BR:
fru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M3M36_02455
Ribosome biogenesis [BR:
fru03009
]
Prokaryotic type
rRNA helicases
M3M36_02455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
USS92662
LinkDB
All DBs
Position
complement(530885..532438)
Genome browser
AA seq
517 aa
AA seq
DB search
MLKFNELGLSQAILQSIEAHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPI
LENIDLNDQNIQAVIISPTRELAIQTAEELKKLGSDKSVNVQVVFGGADIRPQIKGLKSH
PQILVGTPGRLLDHINRKTAKLFGVKTLVLDEADEMLNMGFLDDIEAIIAQVPDHRQTLL
FSATMPEAIKRIGMKFMTNPEYIQIKAKQLTTDLVDQYFIRVRHEEKFDALTRTIDIQEP
FLGIVFGRTKRRVEELARGLEARGYRAAGLHGDLTQQMRSRVLDQFKAHEINLLVATDVA
ARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTLVAPNEMDYLRAVEELTK
KRMTPLQPATLKEARIGRINGAIDTAAATIKGLNPAELQEQVNQMTSQFTAEQLAAGLLA
AVAGLDKQNAPVVLSRERPLPRRKGGSSSRRGGYRGGNRRSNGNGGGYRGNGGGRRNGNG
GGYRGGNRSHSENRDNRGGHQGGGNRRRRDFTVREKD
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
attttgaagtttaatgaactcggcttgtcacaagccattttgcagtcaatcgaagcccac
ggctacgttgaagcaacccccatccaagaaaaaacaattcctttgaccttagctggtaag
gatgttatcggtcaagctcaaacaggaactggtaagacagccgcttttggtttgccaatc
ttggaaaacatcgacttgaatgatcaaaacatccaagccgtgatcatctcaccgacacga
gaattagcaatccagactgctgaagaattgaagaagcttggttctgacaagtcagtcaac
gttcaagtggtcttcggtggtgccgatatccgcccacaaattaagggcttgaagtcccat
ccacaaattttagttggaactccgggtcgtttgttggaccatattaaccgtaagactgcc
aagcttttcggtgtgaagacattggttttggatgaagccgatgaaatgttgaacatgggc
tttttggatgacattgaggccatcatcgctcaagttcctgaccaccgtcagacattgttg
ttctcggcaacaatgcctgaagctatcaagcgaatcgggatgaagtttatgactaatcct
gaatatatccaaatcaaggctaagcaattgacaactgatttggttgatcaatacttcatt
cgtgttcgtcacgaagaaaagtttgatgccctgactcggacaatcgatattcaagaacca
ttcttggggattgtctttggtcggacaaagcgtcgagtagaagaattggcccgtggattg
gaagcccggggataccgtgccgctggtttacacggtgatttgacacaacaaatgcgttca
cgtgtcttggaccaatttaaggcccatgaaattaacctcttggttgcaaccgatgttgct
gctcgtgggttggatgttaaggacgtgagtcacgtttataactttgatattccacaagat
ccagaatcatatgttcaccgtattggccgtactggtcgtgccggtgccgaaggtgtttca
gtaacattggttgcaccaaatgaaatggattacttgcgtgctgttgaagaattaacgaag
aagcgtatgacgccattgcaaccagcaacattgaaggaagcccggattggtcgaattaac
ggggccattgataccgcagccgcaacaattaaaggcttgaaccccgctgaattgcaagaa
caagttaaccaaatgacgtcgcaattcacagctgaacaattggctgctggtttgttggct
gctgtggctgggttggataagcaaaacgcgccagttgttttgtcacgtgaacgtcctttg
cctcgtcgcaagggtggttcatcatcacgtcgtggtggctaccgtggtgggaaccgccgt
tcaaatggtaatggtggtggctatcgcggcaatggcggtggtcgtcgtaatggtaatggt
ggcggttaccgtggtgggaaccgttcacattctgaaaaccgcgataaccgtggtggacat
caaggtggtggcaatcgccgccgtcgtgactttactgttcgcgaaaaagactaa
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