Fructobacillus americanaquae: M3M36_04125
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Entry
M3M36_04125 CDS
T08234
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fru
Fructobacillus americanaquae
Pathway
fru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M3M36_04125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fru03021
]
M3M36_04125
03400 DNA repair and recombination proteins [BR:
fru03400
]
M3M36_04125
Enzymes [BR:
fru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M3M36_04125
Transcription machinery [BR:
fru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M3M36_04125
DNA repair and recombination proteins [BR:
fru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M3M36_04125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
CLU_N
Motif
Other DBs
NCBI-ProteinID:
USS91527
LinkDB
All DBs
Position
860492..864109
Genome browser
AA seq
1205 aa
AA seq
DB search
MAGHLVNYGKYRTRRSYASIKEVLDLPNLIEVQLASYQWFLDEGIKEMFNDIMPIEDFQG
NLSLEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGIYYNQEADKNGRPHFGTTVIPNRGAWLEYETDAKGIA
NVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDGYDALNMTLEKDVHKNMSDSRVEESLK
DIYERLRPGEPKTADSSRALLVARFFDPKRYDLAPVGRYKINKKLSLKTRLLNQTLAETL
ADPDSGEIIAEKGTLVDKAVMAKLAPFLDREDFKTVTYTPSGDAVLQDEVVLQKIKIESP
ENPDKTLLLIGNGHLPEDEHNVRPADILAGMNYFMNLQEGVGQVDDIDHLGNRRIRSVGE
LLQNQFRIGLTRMERVVRERMSIQDAATVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQT
NPLGEMNHKRRLSALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATY
GRINKYGFIETPYRRVDWGTHKVTEKIDYLTADEEDNYIVAQANTELEDDGSFVHKTAMA
RYGEENIETPIEKIDYVDVSPKQVVSVGTSVIPFLENDDSNRALMGANMQRQAVPLLDPH
APIVGTGVEYKAAHDSGAAIISTAAGEVEYVDAKEIRVRREDGQLDTYELMKFRRSNGGK
NYNQKPIVKVGEQIDDDQILADGPSMEKGELALGQNPVIAFMTWHGYNFEDAIVLNERLV
REDVYTSIHIEEYDSEARDTKLGPEEITREIPNTGEEQLKDLDENGIIRVGAEVKDGDIL
VGKVTPKGVTDLSAEERLLHAIFGEKAREVRDTSLKVPHGGGGVVQSVRIYTPENGDELA
PGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPIDILLSPMGV
PSRMNIGQVLELHLGFAAKKLGIHVASPVFDGASDDEIEEALAEAGLPQDGKSVVYDGQT
GEAFDKRVAVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVAGRVKVYESIIKGDAIPKPGVPESFRVLVKELQALGLDM
RVLDQEGEAVQLKQMDEDDSVLPVDALEKLARTNPDLLNRDDEEVKVAFDKVEEDAGQNS
TDEQE
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggacatttagtaaattatggtaaatatcgtacccgccggtcatatgccagcatt
aaagaagtgctggatcttccaaatttgatcgaggtacaactggcatcctaccaatggttc
ttagatgaaggaatcaaggagatgtttaacgacatcatgccaatcgaagacttccagggt
aacttgtctttggagtacgtggactatcaattgatggaaccaaagtacaacatcgatgaa
gctcgtgaacacgatgcgaactactcagcaccattgcacgtgacgttgcgtttgacaaac
catgaaaccggtgaaatcaagtcacaagacgtcttctttggtgactttccattgatgact
gaacagggaacgttcatcattaacggtgccgaacgagtaattgtttcacaattggttcgc
tcacctggaatttattacaaccaagaagctgacaagaatggtcgcccacacttcgggaca
acagttatccccaaccgtggtgcttggttggaatacgaaacagacgcaaagggaattgcc
aacgttcgtatcgaccggacgcgtaagttgttgatgacagaattggttcgtgcccttggc
tttggttcagattcggatattattgatatcttctcagacggttacgacgccttgaacatg
actttggaaaaggatgttcacaagaacatgtctgattcccgtgttgaagaatcattgaag
gacatttacgagcgtttgcgtccaggtgaaccaaagacggccgactcatcacgtgctttg
ttggttgctcgtttctttgatccaaaacgttatgatttggcaccagttggtcgctacaag
atcaacaagaagttgtcattgaagacgcgcttgcttaaccagactttggctgaaacattg
gccgaccctgattctggtgaaattattgctgaaaagggaacgcttgttgataaggctgtg
atggccaagttggcaccattcttggatcgggaagactttaagacagttacttatacacca
tctggtgatgctgtcttacaagacgaagtggttttgcaaaagattaagattgaatcaccc
gaaaatccagacaagactttgcttttgattggcaacggtcacttgcctgaagacgagcat
aatgttcgcccagctgacatcttggcaggaatgaactacttcatgaacttgcaagaaggg
gttggtcaagttgatgacatcgatcacttgggaaaccgtcgcattcgttctgttggggaa
ttgttgcaaaatcagttccgtattggtttgacgcgaatggaacgagttgttcgcgaacgg
atgtcaattcaagatgctgcgactgttacgccacagcaattgattaacattcgtccagtt
gttgcagctgtgaaggaattcttcggttcatcacagttgtcacagttcatggatcagacg
aacccattgggtgaaatgaaccacaagcgtcgtttgtcagcccttggtcctggtggattg
actcgtgatcgtgccggtgtcgaagttcgagatgttcactatacacactatggtcgaatt
gacccaattgaaacgcccgaaggtcctaacattggtttgatcaactctttggccacttat
ggtcgaatcaacaagtatggctttattgaaacgccataccgccgtgttgattggggaact
cataaggttaccgaaaagattgattatttgacggccgatgaagaagataactatatcgtt
gctcaagccaacacggaattggaagacgatggctcatttgttcataagactgccatggcc
cgttacggtgaagaaaacatcgaaacgccaatcgaaaagattgactatgtcgatgtttcg
ccaaagcaggttgtttcagtcggaacgtcggttattcctttcttggaaaacgatgattcc
aaccgtgctttgatgggtgccaacatgcagcgtcaggccgtgcctttgcttgacccacat
gcgccaatcgttggtactggtgttgaatataaggctgcccacgattctggtgctgccatt
atctcaactgcagcaggtgaagttgaatatgttgatgccaaggaaatccgtgtccgtcgt
gaagatggtcaattggatacctacgagttgatgaagttccgccgttcaaacggtggtaag
aactataaccaaaagccaattgttaaggtcggggaacaaatcgatgatgaccagattttg
gcagatggtccatcaatggaaaagggtgaactggcccttggacaaaacccagtgattgcc
tttatgacttggcatggttataacttcgaagatgccattgtcttgaacgaacgtttggtt
cgtgaagacgtttatacatcaattcacatcgaagaatatgattcagaggctcgtgatacg
aagctcggccctgaagaaatcacacgtgaaattcctaatactggtgaagaacagttgaag
gacttggacgaaaacggaattatccgtgttggtgccgaggttaaggatggtgacatcctg
gttggtaaggtaacaccaaagggtgtgactgatttgtcagccgaagaacgtttgctacat
gctatctttggagaaaaggcccgcgaagttcgcgatacttctttgaaggttccccacggt
ggtggcggagtggttcaatccgttcgtatctacacacctgaaaatggtgatgaattggct
ccaggtgttaacatgatggttcgtgtttacatcgctcagaagcgtaagattcaagtcggt
gacaagatggccggtcgtcacggaaacaagggtactgtttcagtcgttgttcctgaagaa
gacatgccttacttgcctgatggaacgccaatcgacatcttgttgtcacccatgggtgtg
ccatcacgtatgaacattgggcaggttttggaactgcacttgggatttgccgctaagaag
ttgggcatccacgttgcttcccctgtcttcgatggtgcttcagacgatgaaatcgaagaa
gcattggctgaagctggtttgccacaagatggtaagtctgttgtttatgacggacaaact
ggtgaagcctttgataagcgtgttgccgttggtgttatgcactatatgaagttggcccac
atggtcgacgacaagattcacgcccgttcaatcggcccttactctcttgttacgcaacag
ccattgggtggaaaagcccaattcggtggacagcgtttcggagaaatggaagtttgggct
ttggaagcctatggtgctgcctacaccttgcaagaaatcttgacttacaagtcggatgat
gttgctggtcgtgtaaaggtttatgaatcaatcatcaagggtgacgcaatccctaagcct
ggtgtgccagaatcattccgtgtcctggtgaaggaattgcaagccttaggtctggatatg
cgtgtcttggaccaagaaggtgaagccgttcaattgaagcagatggatgaagacgattca
gtcttaccagttgatgctttggaaaagttggcccgtacgaaccctgatttgcttaaccgc
gatgacgaagaagttaaggtagcctttgataaggtagaagaagacgctggtcaaaactct
actgatgaacaagaataa
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