Fructobacillus americanaquae: M3M36_05930
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Entry
M3M36_05930 CDS
T08234
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fru
Fructobacillus americanaquae
Pathway
fru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M36_05930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fru03019
]
M3M36_05930
Messenger RNA biogenesis [BR:
fru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M3M36_05930
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
USS91847
UniProt:
A0ABY5C0F1
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All DBs
Position
complement(1214452..1216134)
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AA seq
560 aa
AA seq
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MSAVDIKENEVGVYALGGLGEIGKNTYGIQYQDEIIVVDAGIKFPEDSLLGIDYVIPDYS
YLVENIDKVKALVITHGHEDHIGAIAYFLQAVNVPVYAGPLAMALIRNKLEEKQLLNRAE
LHEITDGSVIEFNQMSVEFIRTTHSIPDVFAVSVKTPVGTIVETGDFKFDLTPTTKQKPN
LWSMARTGEEGVLLLMSDSTNAERPEWTKSEAWVEKTVQKLFEQLKHGRIIFATFASNMN
RIKMATDAAIAHGRKIAVFGRSMESAMTNGRALGYLNIPDDALIEQSQIKNIPDDELLIL
STGSQGESMAALARIANGTHKQVRLKPNDNVIFSSSPIPGNTASVNAVINKLEEGGANVI
HGKLNNIHTSGHGGQEEQKLMLSLMQPEYFMPVHGEYRMLKVHAGLAEELDIPKDHTFIL
ENGDVLALDGVNPPRIAGHFPAEDTYIDGSGIGDIGSIVLHDRLKLSQDGLVIVTATIDL
KKKEILSGPDILSRGFVYMRESGDLINDGRHVIFNTIRKAMSAKNASESDIRQIIIDDLS
KYLHKETARKPMILPMLIMI
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagttgatattaaggaaaacgaagtcggcgtttacgcccttggcggacttggc
gaaattggaaaaaacacatatggaatccaataccaggacgaaattatcgtcgtggatgcc
ggaattaagtttccggaggactcccttttaggaattgactatgtcattccagactattcg
tacttagtcgaaaacattgacaaagtaaaagctctggtgattacccacggacacgaagac
cacatcggggcgattgcttactttttacaagccgtcaatgtaccagtttatgctggccca
ctggcaatggccttaattcgtaacaaattagaagaaaagcagctcttaaaccgcgctgaa
ctccatgaaattacggatgggtcggtaattgaatttaaccaaatgtcagttgaattcatt
cgcaccactcactcaatcccagacgtttttgccgtttcagtcaaaacacccgttggaacg
attgttgaaaccggtgatttcaaatttgatttaacaccaaccaccaagcaaaaaccaaat
ctctggtcaatggctcgcactggtgaagaaggtgttttgttactaatgtccgattcaact
aacgctgagcggcccgagtggacaaaatcagaagcctgggttgaaaaaactgttcaaaaa
ctttttgaacaactcaagcacggccggattatttttgctactttcgcttccaacatgaac
cgaatcaaaatggcaacagatgcagccattgctcatggtcgtaagattgccgtcttcggc
cgatcaatggaatcagccatgacgaacgggcgagcccttggatacttaaacatcccggac
gatgctctgattgagcagtcacagattaaaaatatcccagatgacgaacttttgattctc
tcaaccggatcacaaggagaatcaatggccgctttggcacgaattgctaatgggacgcac
aagcaggttcgcttaaagccaaacgataacgtgattttttcttcttccccaattcctggg
aacacggcctctgttaacgctgtaattaataaactagaagaaggcggcgctaacgttatt
catggtaagttaaacaatatccacacttctggtcacggtggccaagaagaacaaaagttg
atgttatcattaatgcagcctgaatactttatgcccgtccacggtgaataccggatgctc
aaagtccatgctggcctagccgaagagttggatattccaaaggaccatacctttatccta
gaaaacggtgatgtcctcgctcttgacggtgtgaatccaccacggattgccggacacttc
cctgccgaagatacttatatcgatggctcaggaattggtgatattggttcgattgtctta
cacgaccgcttaaaattgtcacaagatggtttggtcatcgtcacagcgacgattgactta
aaaaagaaggaaatcctttccggacctgatatcctatcccgtggttttgtttacatgcgt
gaatctggtgacctcattaatgatggtcgtcatgtcattttcaatacgattcgtaaggca
atgtctgcaaagaatgctagtgaatccgatattcgtcagatcatcattgatgatctttcc
aagtatttgcataaagaaacggctcgtaagccaatgattttgccaatgctgattatgatt
taa
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