Fructobacillus americanaquae: M3M36_06285
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Entry
M3M36_06285 CDS
T08234
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fru
Fructobacillus americanaquae
Brite
KEGG Orthology (KO) [BR:
fru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fru03009
]
M3M36_06285 (rlmD)
Enzymes [BR:
fru01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
M3M36_06285 (rlmD)
Ribosome biogenesis [BR:
fru03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
M3M36_06285 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Cons_hypoth95
Methyltransf_15
Methyltransf_25
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
TRM
UPF0020
DOT1
DREV
RrnaAD
TM1506
N6_N4_Mtase
Methyltransf_12
TPMT
CMAS
Methyltransf_4
Parvo_NS1
Motif
Other DBs
NCBI-ProteinID:
USS91916
LinkDB
All DBs
Position
1288110..1289495
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AA seq
461 aa
AA seq
DB search
MAKANRTIKQAAPIHKNEVITASVTDLTYQGLGVAKVDGFPLFVTNALPGEKANILVTKV
LKNYGFARVQRLLEKSADRVELTDQLALTTGIAPLASLAYPAQLAWKKSQVQQLFKKARL
DVEVADTIGMADPTHYRNKAQVPARMLNGRLETGFFRRGSHKLIPTDSFYIQDPAVDEAI
RVTRDVLQEFGISAYDEEEGRGVIRHVMARIGKATGELMIVLVTKTKKLPEAGAIVAALK
ARLPKLKSVIQNVNQSQTNVIMGYQNQVLWGKPAIEDILLGKKYLIGPNSFYQVNPETTA
KLYQLAKEKAELKKTDTVIDAYCGIGTIALTVANDVSEVYGVELVEAAIDDAKENARINQ
VTNSHFVAADAPSQMLQWAEEGLKADVVFVDPPRKGLTTDFIEAVSTISPKRLVYVSCNP
ATMVRDLKELVDHGYALEGPIQPVDQFPQTTHVEAVAVLTK
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagccaaccgcacaattaaacaggccgctccaatccataaaaatgaagtcatc
actgcttcggtgaccgatttaacctatcaaggtctgggcgtagcgaaagtggatgggttt
ccgctctttgtaactaatgcgctgccaggtgaaaaggccaacattttggtgacaaaggtc
ctaaaaaattacggttttgcccgtgtacaacggttgttggaaaaatcagcggaccgagtt
gagttgacggatcagttggccttaacgacagggattgcgccattagccagcttagcttat
ccggctcagttggcttggaaaaagtctcaggtacagcaattatttaagaaggcccgactt
gacgtggaagtggccgatacaattgggatggccgatccaacccattatcgtaataaggca
caagtaccggccagaatgctgaatggtcgtctagaaaccggttttttccgtcgtgggtcg
cataagttgattccgaccgattccttttacattcaagatcccgccgtggatgaagctatt
cgtgtgacccgggatgtcttacaagagtttggtatttctgcttacgacgaagaagagggc
cgtggtgtcatccgtcacgtcatggctcgcattggaaaagcgactggtgaattaatgatc
gttttggtgacgaaaaccaagaagttaccagaagccggggcaattgtagccgcactaaag
gctcgtttaccaaagcttaaatcggtcattcaaaatgtcaatcagtcccaaacaaacgtg
attatgggttatcaaaatcaggtattgtggggaaagccagccattgaagatattttgcta
ggcaagaaatacctgattggccctaattctttctatcaggttaatcccgaaacaacagct
aagctttaccaattggccaaggaaaaggccgaattgaaaaagacggataccgtgattgat
gcctattgtggtatcgggacaattgcgttgacggtggccaacgatgtttctgaggtctac
ggagtcgaattagtcgaagcggccatcgatgatgccaaagaaaacgcccgcattaaccaa
gttaccaatagtcattttgttgcggctgatgcgccaagtcagatgctccagtgggctgaa
gagggcctaaaggcggatgttgtctttgttgatccaccgcggaaaggcttaacaactgat
tttattgaggctgttagtacaatcagcccaaagcgcctggtgtatgtttcatgtaatccg
gcgacaatggtgcgtgatcttaaggagttggtagatcatggttatgcccttgagggtcct
atccaaccggtcgaccagttcccacaaacaactcatgttgaagcagtggcagtgctgaca
aaataa
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