Fastidiosipila sanguinis: C5Q98_00840
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Entry
C5Q98_00840 CDS
T05345
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fsa
Fastidiosipila sanguinis
Pathway
fsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C5Q98_00840 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsa03400
]
C5Q98_00840 (mfd)
Enzymes [BR:
fsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C5Q98_00840 (mfd)
DNA repair and recombination proteins [BR:
fsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C5Q98_00840 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
TsaE
DUF7053
UB2H
Motif
Other DBs
NCBI-ProteinID:
AVM41865
UniProt:
A0A2S0KLF2
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All DBs
Position
219737..223474
Genome browser
AA seq
1245 aa
AA seq
DB search
MLNDKAKSETKAEKINKENWIVESALIDPKFTELKDIWNLGAYKKTLAVNSKQLSHINVV
GPIENHAAFILSALLLQKDDNDFAFVVASDPLQSRRLQEALKAFYPGEVLEFPAREFNLS
RIESASKNEMHQRIKVISRLLETREEKLRPIVLITAAALQQRMPDMSSLLDRYIKIDLNT
IMEPAELVARLSDIGYKHSEVAENAGEFSQRGDIVDLVPINADENGIRISFFDNEIEQIR
LYDLESQRQFDEVNEIIISPAQEINISDEQRITLVERIKDFRDEQSENMYKKAASRDEVE
AFKALCNYDIERLENNLSVEILDRWLEFIYPEKTSILDYFQELCGRAVVFELKKLQEFLD
AWQASKEQQIKQLLVQGKTTTLVAENIIGKVAIMKSLDQDFQVLGFALLDGSGNGFPAAK
KFAFRSLAAENYRAREDEFYEMLKERQAENKFTCIYVADDSKRDALNEKLLLNAPAAVKR
LIPRALNEGFVWPDAKLAIFGTENVFGKRYKRNKRRKKNEQTIKFFSDLEIGSYVVHEDH
GIGLYEGIETITTASGSKDYIKVSYAKGDSLFLPMEAIEQLSKYVGMDNRKPRLSSLGGG
EWSKLKTRARDSIKKLATNIVKLYAERNRIKGYKFSEDTVWDNEFAEGFPFEETEDQLEA
MEDVREDMQSDKVMDRLLIGDVGFGKTEVAFRAMFKAVSNGMQAAMLSPTTVLTQQHYEN
FKERAKGYPIEVAVLSRFTSKKEQQEIVKGLKNGMVDVVIGTHRLLSDDVQFKRLGVLVV
DEEQRFGVDHKEKLKEKYPNVDVLSLSATPIPRTLHMSLSGIRDISLLEEPPQERREIQT
FVLEYDEAIINEAIVREVGRGGQVFYLINNVKKIPEIVKHLEEKIPGLRVSIGHGQMPES
QLEAIIHAFIKGESDVLVCTTIIESGIDMPNVNTLIARDADRLGLAQLYQIKGRVGRSNK
QAYAFITYDGNKNLTEDAQKRLATIRDFTELGSGMKIAMRDLEVRGAGNLLGGEQHGHME
AIGYELYVQMLEEEVQLAREEAEEEEKLAADTDSAGSSVTGAEDASSQVIERSEVLSENM
PLNKDFVTRIDIKLDAYLPSSLIPSEGQRMDMYKRLLDIEDIDEYYDILDELMDRYGELP
EETYALADISYVESQARKMHLNRIYIDRKDIILEFSPELRPNMEALGVLLNLEKYKHKIK
FIASGAGNIRWGGAAKNKKLVSANLRELFKDLEMALRVQAEKLSK
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatgacaaagcaaaatcggaaactaaagcagaaaaaataaacaaagagaattgg
atagttgagagcgcattaatagatccaaaatttacagagttaaaagacatctggaatcta
ggtgcttataagaaaacattagcggttaacagtaagcaactatctcatataaatgttgta
ggtccaatagagaaccatgcagcatttattttgtctgctctgcttttgcaaaaagatgac
aatgacttcgcctttgtcgtagcaagtgatccactgcaatctcgccggttacaagaagcg
ttgaaggctttttatcccggagaggtattagagtttccagctagggaatttaacctaagt
cggatagaatctgcgagcaaaaatgagatgcaccaacgtattaaggttataagtcgtttg
cttgagacacgagaagagaagctgagaccgattgtcttaataactgctgcagctttgcaa
caacgcatgcctgatatgtcgagcctcttagatagatatataaagattgaccttaatact
attatggaaccagcagagcttgtggcaagacttagcgatataggttacaagcactctgaa
gtagcagaaaatgcaggtgagttttcgcaaagaggagatatagttgacctagtgccaata
aatgcggatgaaaatggtataagaatttctttctttgataatgaaattgaacaaattaga
ttatatgacttagaatctcaacgtcagttcgatgaagttaatgaaataattatttcaccg
gcgcaagaaattaacattagcgatgaacaaagaataactctggtcgagagaatcaaagac
ttccgagatgagcagagtgaaaatatgtataaaaaggctgccagtcgagatgaggttgaa
gcattcaaagctctttgtaactatgatattgaacgcttagaaaataacttaagcgttgag
attttagatcgttggctagaattcatttacccagagaaaacaagtattcttgattatttc
caagagttatgtggtagggcagtagtttttgaactgaaaaaactacaagagtttttagat
gcttggcaagctagcaaagagcaacagatcaagcagctgcttgtacagggcaaaactaca
accctagtggcagagaatattattggaaaagttgccataatgaagagcttggatcaagat
tttcaggttttgggttttgcgttgctagatggttctggtaatggtttccctgctgccaag
aaatttgcattcagaagcttagctgccgagaattatagagctagagaagatgagttctat
gagatgttaaaagaacgtcaggcggaaaataaattcacatgtatatatgtagctgatgat
agtaagcgagatgctcttaatgagaagttattgcttaatgctcctgcagcggtaaaaaga
ctaataccaagagcgctgaatgaaggttttgtctggcctgatgcgaagctagcaattttt
ggaactgagaatgtttttggaaaacgttataagcgcaataagcgtaggaaaaagaatgag
cagacaattaaattcttctcagatcttgagattggttcctatgtggtacatgaggatcat
ggtataggtttatacgagggtattgaaactattacaactgcatcaggaagcaaagattat
attaaagtatcctatgctaaaggtgatagtctattcttgccaatggaagccatagagcaa
cttagcaagtatgtaggtatggacaacaggaagcctagactttctagcctgggcggaggc
gaatggtctaagctaaaaactcgagccagagattccattaagaagttggcaacaaatatt
gtcaaactttatgcagagcgcaatcgcataaaaggttataagtttagtgaggatacagtt
tgggataatgaatttgcggaaggtttcccttttgaagagactgaggatcaactggaagct
atggaagacgttagagaagacatgcagtctgacaaagtcatggataggctcttaatcgga
gatgttggctttggcaaaactgaagtagcttttagagcgatgtttaaagctgtttcaaac
ggtatgcaggcagcaatgctttcgccaactactgttctaactcaacaacattacgaaaat
ttcaaggaacgtgctaagggctatcctattgaagttgctgtcttgagtagatttacaagc
aaaaaagaacagcaagagattgttaaaggactgaagaatggcatggttgatgtggttatt
ggaacgcataggttgttgtctgatgatgtgcaatttaagcgtttgggtgtgctagtagtg
gatgaggagcagagatttggagttgaccacaaagaaaaattaaaagaaaaatatccaaat
gtggatgtgctctctctaagtgctacacctataccaagaactttgcatatgtctctgtct
ggaattagagatatttcacttttggaagaacctccacaagagcgtagagagatacagacc
tttgtcctggaatatgatgaggcgattattaatgaagctattgttagagaagttggtcgt
gggggtcaggttttttacctgataaataatgtaaaaaaaatacctgagattgttaaacac
ttagaggaaaaaatacctgggttaagagtatctatcggccacggtcaaatgcctgagtca
caacttgaagcaataatacatgcttttattaaaggtgagtcagatgtgctagtgtgtaca
actatcattgaatcaggaattgatatgccaaatgtcaatacgcttatagctcgtgatgca
gatagactgggattggctcagctttatcaaattaaggggcgtgtaggaagatctaataaa
caagcttatgcgtttataacctatgatggtaacaaaaatttgaccgaagatgcacagaag
agactagcgacaataagagacttcacggaattaggttctggtatgaaaattgccatgaga
gaccttgaggtgagaggagcggggaatctattaggcggagaacagcatggtcatatggaa
gcgattggctatgaactctatgtacaaatgttagaagaggaagtccaattagcaagggaa
gaagctgaagaagaggagaaacttgctgctgatacggatagcgctggcagtagtgtcaca
ggtgctgaagatgcaagtagtcaagttattgagcgctcagaagttctgtcggaaaatatg
cctttgaacaaagatttcgtaactcgcattgatattaaacttgatgcttatcttccgagt
tctttaattccttcagagggccaaagaatggatatgtataagagactattagatattgaa
gatatagatgaatactacgatatcttggatgaacttatggatagatatggtgaacttcct
gaagaaacttatgcgttagcagatatttcatatgttgagagtcaagcgagaaaaatgcat
ttaaatagaatatatatagatagaaaagatattatccttgagtttagtccagaattaagg
ccgaatatggaagctttaggtgtgttattaaacttagaaaaatacaaacataagataaag
tttattgccagcggtgcaggtaatattcgttggggtggagctgcaaaaaacaagaaatta
gtcagcgctaacttaagagagttgtttaaggatttggagatggcgctgagagtgcaagca
gagaaattatcgaaatag
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