Frondihabitans sucicola: GCM10025867_06870
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Entry
GCM10025867_06870 CDS
T09158
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
fsb
Frondihabitans sucicola
Pathway
fsb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GCM10025867_06870 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fsb03000
]
GCM10025867_06870 (alkA)
03400 DNA repair and recombination proteins [BR:
fsb03400
]
GCM10025867_06870 (alkA)
Enzymes [BR:
fsb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GCM10025867_06870 (alkA)
Transcription factors [BR:
fsb03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GCM10025867_06870 (alkA)
DNA repair and recombination proteins [BR:
fsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GCM10025867_06870 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
ThrE
HTH_23
DUF6233
Motif
Other DBs
NCBI-ProteinID:
BDZ48446
LinkDB
All DBs
Position
complement(637410..638915)
Genome browser
AA seq
501 aa
AA seq
DB search
MHLDETLCRGAVKSRDARFDGFFYTAVLSTGIYCRPSCPARTPKDENMVFHPSAASAQAA
GFRACKRCRPDATPGSPEWNVRSDTVARAMRLIADGVVDRDGVPSLAATLGYSTRQVERL
LRDELGAGPQALAQAQRAQSARTLIEATDLPMSDIAFAAGFSSIRAFNDVVRATYAASPS
ELRSGVTGAASPALPHSGVISLRLPFRRPLDPSNLIGHLVATGVPGVEEFRDGAYRSTVR
LPRGWGIVSVRRPVGTAFPVTLRLTDVRDLAAAVSRVRRLLDLDADPVAIGEALGRDDHL
RPLVDAAPGRRVPRILDPAAFALRAVLGQQVSTAAARTHAARLVSALGETIVDPDGGLTH
LFPTAEAIVAAAGERALAPTESVDSRLDEILRMPASRRRTLLAMATALASGDVRLDAGAD
WQAARDAMLALPGIGPWTVETIAMRALGDPDAFVGSDLGVLKAAASLGLPAARPLSSGPP
RRGRRGAPTPCNTSGPPARTP
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcgacgagactctctgccgcggcgcggtgaagagccgcgacgcccgcttcgac
ggcttcttctacacggccgtcctctcgaccggcatctactgtcggccgagttgcccggcg
cgcacgccgaaagacgagaacatggtcttccatccgtcggcggcctcggctcaggcggct
ggtttccgggcctgtaaacgctgccggcccgacgcgacccccggctcgcccgagtggaac
gtgcgctccgacaccgtggccagggcgatgcggctgatcgccgacggtgtcgtcgatcgc
gacggcgtcccgagccttgcggcgaccctgggctacagcacgcggcaggtcgaacgcctc
ctgcgcgacgagctcggcgccggccctcaggcactcgcccaagcgcagcgagcccagtcc
gcccgcacgttgatcgaggcgaccgacctcccgatgagcgacatcgccttcgccgcgggc
ttctcgtcgatccgcgcgttcaacgacgtcgtccgcgccacctacgccgcctcgccctcc
gaactgcggtcgggcgtcaccggtgcagcctctcccgcgctgccgcactccggcgtcatc
tccctgcggctcccgttccgccggccgctcgatccgtccaacctcatcggccatctcgtc
gcgacgggggtgcccggcgtcgaagagttccgcgacggcgcctatcgctcgacggtccgc
ctgccgcgcggctggggcatcgtctcggtgcggcgtcccgtcggcaccgcgttcccggtc
acgctccggctgaccgacgtgcgcgacctcgctgcggccgtgagccgcgtgcgacggctg
ctcgacctcgacgccgatcccgtggccatcggagaagcgctcggccgtgacgaccacctg
cgccccctcgtcgatgcggcgcccgggcgtcgggtgccgcgcatcctcgatcctgccgcg
ttcgctctgcgagccgtgctgggccagcaggtctcgacggcggccgcccgtacccacgcg
gcccgactggtgtccgccctcggcgagacgatcgtggatcccgacggcgggctcacgcac
ctgttcccgaccgccgaggccatcgtggccgccgcgggcgaacgcgctctcgcgcccacc
gagtcggtcgactcgcgtctcgacgagatcctccgcatgcccgcctcgcgccgccgcact
ctcctcgcgatggcgaccgcgctggcgtccggcgatgtccggctcgacgccggcgccgac
tggcaggctgcgcgcgacgccatgctcgccctgcccggcatcggcccgtggaccgtcgag
accatcgccatgcgagccctcggcgatcccgacgcgttcgtcggcagcgacctcggcgtg
ctgaaggcggccgcatcgctcggcctccccgcggcgcgcccgctctcgagcgggcctccc
aggcgtggtcgccgtggcgcgcctacgccgtgcaatacctctgggccgccagcccgcacg
ccgtga
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