Frondihabitans sucicola: GCM10025867_12890
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Entry
GCM10025867_12890 CDS
T09158
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fsb
Frondihabitans sucicola
Pathway
fsb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fsb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCM10025867_12890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsb03021
]
GCM10025867_12890 (rpoC)
03400 DNA repair and recombination proteins [BR:
fsb03400
]
GCM10025867_12890 (rpoC)
Enzymes [BR:
fsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCM10025867_12890 (rpoC)
Transcription machinery [BR:
fsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCM10025867_12890 (rpoC)
DNA repair and recombination proteins [BR:
fsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCM10025867_12890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF1690
Motif
Other DBs
NCBI-ProteinID:
BDZ49048
LinkDB
All DBs
Position
1187083..1190964
Genome browser
AA seq
1293 aa
AA seq
DB search
MIEATTFDELRIGLATAENIRAWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISIDDEGRHADMPGLENELRLEIKQLESQRDSRIADRLKKLEDD
LAALEAEGAKSDQKRRAKDGAEKEMSQTRKAFDEDINRLERVWEDFRSLKVGDLKPEDAV
FHELQDRFGIYFEAHMGAEAIQKRLQSFDLEAEAEILHDQIANGKGQKKIRAIKRLRVVS
SFLSTGNSPAAMVLEVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPTLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPAQDMIIGLHHLTTVNEGATGEGR
AFSSVSEAILAKDQGSLDLNAVVKIRIPGLTFAEGEAPAGYVEGDTTLVETTLGRAIFNE
ALPDDYPFVQEVTDKGVLSTIVNDLAERYPKVAVAAALDNIKDAGFYWASRSGVTVALSD
ILTPPRKPEIVAGYEKQAAAVQGEFDKGLISDAERRADLIKIWTEATNEVAAAMRENFPK
NNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGDIIPRPIISSYREGLSVAEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTRGLEMPIAAPDSTGKLVRDAT
VENTVYARTLSADAVDPKGTVVAEAGADVGDVLIDLLVAAGVETIKVRSVLTCESAVGVC
AKCYGRSLATGNLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVTE
LFEARTPKGASPIADAAGRVTIEDTDRARRVILTPDNGDEPVIYPVLKRSTLLIEDGQHV
ELGQQIIAGAVDPKEVLRVKGVRAVQQHLVGGVQDVYRSQGVPIHDKHIEVIVRQMLRKV
TVVDHGDTDLLPGELVDRMRYNEINRGALTEGKKTASARQEVLGITKASLATESWLSAAS
FQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLSRYRDVAVEATEEAKAERYPN
RVFTDDASFNEADLSFVDFDSFSSDDFTPGTYN
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgaagcaacaactttcgatgagctgcggatcggtctcgctactgccgagaacatc
cgcgcctggtcacacggtgaggtcaagaagccggagaccatcaactaccgcacactcaag
cccgagaaggacggcctcttcggagagcagatcttcggacccagccgcgactgggagtgc
gcctgcggaaagtacaagcgagtccgcttcaaaggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtcctcggtccgtcgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggtgttccgtcgcgtctcggctacctgctcgacatg
gcaccgaaagacctcgagaaggtcatctacttcgctgcctacatggtcatctcgatcgac
gacgaaggtcgtcacgccgacatgccgggtctcgagaacgagctccgcctcgagatcaag
cagctcgagtcgcagcgcgacagccgcatcgccgaccgtctgaagaagctcgaagacgac
ctggccgccctcgaggcggaaggcgccaagagcgaccagaagcgtcgtgccaaggacggc
gccgagaaggagatgtcgcagacccgcaaggcgttcgacgaagacatcaaccgcctcgag
cgcgtctgggaagacttccgctcgctcaaggtaggcgacctcaagccggaagacgccgtc
ttccacgagctgcaggatcgcttcggcatctacttcgaggcccacatgggcgccgaggcg
atccagaagcgtctccagtcgttcgacctcgaggccgaggccgagatcctccacgaccag
atcgcgaacggcaagggtcagaagaagatccgcgccatcaagcgcctgcgcgtggtgagc
tccttcctgtcgaccggcaactcgccggccgccatggtgctcgaggtcgtcccggtcatc
ccgccggagctccgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgtcttcgtcgtctgctcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcc
ctgttcgacaacggtcgccgcggtcgtcccgtcaccggtaccggtaaccgcgccctgaag
tccctgagcgacatgctcaagggaaaacagggtcgtttccgccagaacctgctcggcaag
cgcgtcgactactccggacgttcggtcatcatcgtcggcccgacgctgaagctgcaccag
tgcggtctgcccaagcagatggctctcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctcagccacgctcagaacatcaagagcgccaagcgtatggtcgagcgttcgcgc
ccgcaggtgtgggacgtcctcgaagagatcatccgtgagcgcccggttctgctgaaccgt
gctcccacgctgcaccgcctgggcatccaggccttcgagccgctcctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgctgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctcccgctgagcgtcgaggcgcaggccgaggcccgcatcctcatgctg
gcgtcgaacaacatcctgaagccgtccgacggccgtccggtgaccctgcccgcgcaggac
atgatcatcggcctgcaccacctcacgacggtcaacgagggagcaaccggcgaaggccgc
gcgttctcgtccgtctccgaggcgatcctggccaaggatcagggctcgctcgacctcaac
gccgtcgtcaagatccgcatcccgggtctgacgttcgccgagggtgaggctcctgccggt
tacgtcgagggtgacaccaccctggtcgagaccacgctgggccgcgcgatcttcaacgag
gcgctcccggacgactaccccttcgtgcaggaggtcaccgacaagggtgtcctctcgacg
atcgtcaacgacctcgccgagcggtacccgaaggtcgccgtcgccgcagcactcgacaac
atcaaagacgcgggcttctactgggcctcgcgttccggtgtcacggtcgctctctccgac
atcctcacgcctccgcgcaagccggagatcgtcgcgggctacgagaagcaggccgcggcc
gtccagggcgagttcgacaagggcctcatctccgacgccgagcgccgtgccgacctgatc
aagatctggacggaggcgacgaacgaggtcgccgcggccatgcgcgagaacttcccgaag
aacaacaccatcaaccgcatggtgacgtcgggtgctcgtggtaactggctgcaggtccgc
aacatcgcgggtatgcgtggtctggtgaacaacccgaagggtgacatcatccctcgtccg
atcatctcctcgtatcgcgagggtctgtcggtggccgagtacttcatcgcgacgcacggt
gcccgcaagggtctggccgacacggctctccgcacggccgactcggggtacctcacgcgt
cgtctcgtcgacgtctcgcaggatgtcatcatccgcgaagacgactgcggcaccacgcgc
ggtctcgagatgcccatcgcggcccccgactccaccggcaagctcgtccgtgacgccacg
gtcgagaacacggtctacgcacgcaccctctcggccgacgctgtcgacccgaagggcacc
gtcgtggccgaggccggcgccgacgtcggagacgtcctgatcgacctcctggtcgctgcg
ggcgtcgagaccatcaaggtccgttcggtcctgacctgcgagtcggccgtcggtgtctgc
gcgaagtgctacggccgttcgctcgccaccggcaacctcgtcgacatcggagaggccgtc
ggcatcatcgcggcccagtcgatcggcgagcccggcacgcagctgaccatgcgtaccttc
cacaccggtggttcggcttccgccgacgacatcacgcagggtctgccccgcgtcaccgag
ctgttcgaggcgcgtacccccaagggtgcttccccgatcgccgatgccgccggacgcgtc
acgatcgaagacaccgaccgtgcccgccgcgtgatcctcacccccgacaacggcgacgag
ccggtcatctaccccgtcctcaagcgttcgaccctcctcatcgaggacggtcagcacgtc
gagctcggtcagcagatcatcgccggtgcggtcgacccgaaggaggtccttcgcgtgaag
ggcgtccgtgcggtccagcagcacctcgtcggcggcgtgcaagacgtctaccgctcgcag
ggtgtgccgatccacgacaagcacatcgaggtcatcgttcgtcagatgctccgcaaggtg
accgtcgtcgaccacggcgacaccgacctgctgccgggtgagctcgtcgaccggatgcgc
tacaacgagatcaaccgcggcgccctgaccgagggcaagaagacggcttcggctcgtcaa
gaggtcctcggtatcaccaaggcgtcgctggcgaccgagtcgtggctgtcggccgcttcg
ttccaggagaccacgcgtgttctcacgcaggccgccatggaggggaagagcgacccgctg
atgggcctcaaggagaacgtcatcatcggaaagctgatcccggccggtaccggcctcagc
cgttaccgcgacgtggccgtcgaggccaccgaagaggcgaaggccgagcgctacccgaac
cgtgtcttcaccgacgacgcgtcgttcaacgaggccgacctcagcttcgtcgacttcgac
tcgttctcgagtgacgacttcactccgggtacgtacaactaa
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