Frondihabitans sucicola: GCM10025867_22660
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Entry
GCM10025867_22660 CDS
T09158
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fsb
Frondihabitans sucicola
Pathway
fsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10025867_22660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsb03019
]
GCM10025867_22660
03009 Ribosome biogenesis [BR:
fsb03009
]
GCM10025867_22660
Enzymes [BR:
fsb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GCM10025867_22660
Messenger RNA biogenesis [BR:
fsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10025867_22660
Ribosome biogenesis [BR:
fsb03009
]
Prokaryotic type
rRNA processing factors
GCM10025867_22660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
BDZ50025
UniProt:
A0ABN6Y2C0
LinkDB
All DBs
Position
2120789..2123545
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AA seq
918 aa
AA seq
DB search
MVEKNENSPKRRSRLFAGFRSRQQAPQPEAAASPILPRAEEAPAAPAAEPVVPQEAPAVT
NENGTPVPASTTPESLIDTEALERDEADSTPVAPSAPTSPFESPLTTTSLIFHAPEIAPL
PARSERDDDDEDGDHDGGSQRRRSRQRSGRSDDSSGEVTSSRTRSRAGREPRERPEPELI
TEPQRVKGSTRLEAKKQRRRDGRDAGRRRPVVTEAEFLARRESVDRKMIVRSQGDSIQIG
VLEDGILAEHYVAKSQNVSLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDN
VEHGNQPRRIELALKPGDRVLVQVTKDPVGHKGARLTSQISLPGRFLVYVPNGSMNGISR
KLPDTERARLKKILKEALPENTGVIVRTAAEGATEEQLTLDVKRLLNQWADISKKVEACN
APALLHSEPDLLIKIVRDVFNEDFHQLVIDGDEARETIEQYLTAVAPDLLDRVSAYEGDK
DSFDEFRLNEQIDKALDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFVGSGGNLEETVTKN
NLEAAEELVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSL
GLIQMTRKKLGLGLMESFQEIGVDRQQAQEQQQQNRQKSQERRRAKASNGNGGGNGRPQS
PRSNEAHPATGTIHAITDDVKNALAKIAASTVPHADGTAPNASETAAAVEAAIDAVAASA
DSAPASAETASPSDDAPASGRSRRGRGRRASASTASTAAENVTEAPDTVTLIDIPVSAPA
KATAKTPAEKRAASAAEAPAAAESAAVAPAEAPAEAASSKTSRRSQATVTQPEATVAILD
IPVAKVERAPRRLSTHDAEQILDSVLGALPEPKQPGQGRNRSRRASSTGTASAPAAATDG
DAEAGPFILGVGVSSDDL
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaagaacgaaaacagtcccaagagaagaagccgcttgttcgccggattccgg
tcgcgtcagcaggcaccgcagcccgaggccgcagcttctcccatccttccgcgagccgaa
gaggcgcctgccgccccggccgccgaaccagtcgtgcctcaggaggcccccgccgtgacg
aacgagaacggcaccccggtgcccgcttcaaccacccccgaaagcttgatcgacacggag
gcgctcgagcgcgacgaggccgattcgacgcccgtcgccccgtcggctccgacatcgccg
ttcgagtcgcccctcacgacgacgagcctgatcttccacgcacccgagatcgcacccctg
ccggcccgctccgagcgcgacgacgacgacgaagacggcgatcacgacggcggctcgcag
cgccgtcgctcgcgtcagcgctccggccgctccgacgactcctcgggcgaggtcacctcg
tcgcgcacgcggagccgagccggtcgcgagccgcgcgagcgccccgagcccgaactcatc
accgagccgcagagggtcaagggctccacgcgcctcgaggcgaagaagcagcgccgccgc
gacggccgcgacgcggggcgccgtcgtcccgtcgtcaccgaggccgagttcctggcccgc
cgtgagagcgtcgaccgcaagatgatcgtccgctcgcagggcgacagcatccagatcggt
gtcctcgaagacggaatcctcgcagagcactacgtcgccaagtcgcagaacgtctcgctg
atcggcaacgtctacctcggtcgcgtgcagaacgtccttccctcgatggaggccgccttc
gtcgacatcgggcgcgggcgaaacgccgtcctctactccggcgaggtcgactgggacaac
gtcgagcacggcaaccagccgcgccgcatcgagctggcgctgaagccgggcgaccgcgtg
ctggtccaggtcaccaaagatccggtcggccacaagggcgcccgcctcaccagccagatc
tcgctccccggccgcttcctcgtctacgtgccgaacggttcgatgaacggcatcagtcgc
aagctccccgacaccgagcgcgcgcgcctgaagaagatcctcaaagaggctctgcccgag
aacaccggcgtgatcgtccgcaccgcggccgagggcgccaccgaagagcagctgaccctc
gacgtcaagcgcctgctcaaccagtgggccgacatctcgaagaaggtcgaggcgtgcaac
gccccggcgctgctccactcggagcccgacctgctcatcaagatcgtccgcgacgtcttc
aacgaagacttccaccagctggtcatcgacggcgacgaggctcgcgagaccatcgagcag
tacctcaccgccgtcgcccccgacctcctcgaccgcgtcagcgcgtacgagggcgacaaa
gactcgttcgacgaattccgtctcaacgaacagatcgacaaagcgctcgaccgcaaggtc
tggctgccgtcgggcggttcgctgatcatcgaccgcaccgaggcgatgacggtcgtcgac
gtcaacacgggcaagttcgtcggctcgggcggaaacctcgaagagacggtcaccaagaac
aacctcgaggcggccgaagaactggtccgtcagctccgcctccgcgacatcggcggcatc
atcgtcgtcgacttcatcgacatggtgctcgagtcgaaccgcgacctcgtgctccgccgc
ctcgtcgagtgcctgagtcgcgaccgcaccaagcaccaggtcgccgaggtcacctcgctc
ggcctgatccagatgacccgcaagaagctcggcctcggcctcatggaatccttccaagag
atcggtgtcgaccgtcagcaggcgcaagagcagcagcagcagaaccgccagaagtcgcag
gagcgccgccgcgccaaggcgtcgaacggcaacgggggcggcaacggtcgacctcagtcg
ccgcgcagcaacgaggcgcaccccgccaccggcacgatccacgcgatcaccgacgacgtc
aagaacgccctggccaagatcgcggcctcgacggtcccgcacgccgacggcaccgcgccc
aacgcgtccgagaccgccgccgccgtcgaggccgccatcgacgcggtcgccgcgtccgcc
gactccgcgccggcttccgccgagaccgcctccccgtccgacgacgctccggcgtccggg
cgctcgcgtcgaggtcgcggtcgccgcgcgtcggcctcgacggcctcgacggccgccgag
aacgtcacggaggcgcccgacaccgtcacgctgatcgacatcccggtgtcggcacccgcg
aaggccacggcgaagactccggccgagaagcgcgccgcttcggctgcagaggctccggcc
gccgcagagtccgcggccgtcgccccggcggaggcgcctgccgaggccgcgtcgtcgaag
acctcccgccggtcgcaggccaccgtgacgcagcccgaggccaccgtcgcgatcctcgac
atccccgtcgccaaggtcgagcgcgctccgcgccggctgagcacccacgacgccgagcag
atcctcgactccgtgctgggggcgctccccgaacccaagcagcccggtcaaggacgcaat
cggtcccgccgcgcctcgtccaccgggacggcctcggctcccgccgctgcgaccgacggc
gatgccgaggcgggccccttcatcctcggcgtgggagtatcgtccgacgacctctag
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