Frondihabitans sucicola: GCM10025867_30750
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Entry
GCM10025867_30750 CDS
T09158
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fsb
Frondihabitans sucicola
Pathway
fsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10025867_30750 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsb03019
]
GCM10025867_30750 (deaD)
03009 Ribosome biogenesis [BR:
fsb03009
]
GCM10025867_30750 (deaD)
Enzymes [BR:
fsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM10025867_30750 (deaD)
Messenger RNA biogenesis [BR:
fsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM10025867_30750 (deaD)
Ribosome biogenesis [BR:
fsb03009
]
Prokaryotic type
rRNA helicases
GCM10025867_30750 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
adh_short
HEM4
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDZ50834
LinkDB
All DBs
Position
2862168..2863955
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AA seq
595 aa
AA seq
DB search
MTTDTNAPIEADTADAVTAFSDLGLSDAVLKAVREIGYETPSAIQAATIPPLLAGRDVVG
LAQTGTGKTAAFALPILSRLDVSQKKPQALVLSPTRELALQVCEAFEQYASQMRGVHVLP
VYGGQAYGVQLSALRRGVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAE
DVETILADTPDDKQVALFSATMPAQIRRISKQYLNDAEEITVKNKTTTSANTTQRYLMVS
YPQKVDALTRILEVENFEGMIVFVRTKSETETLAEKLRARGYSAAAISGDVAQAQRERTV
NQLKSGKLDILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISF
VTPRERRLLGAIEKATRQPLTEMQLPSVEDVNVTRLARFDDAITAALGQQDRISAFRDIV
GHYVEHHDVPEADVAAALAVVAQGDTPLLLDPAAERPARRERPERSSDRSFDRDDRAPRS
FDRDDRGERPERRPRTTKPMSPYRIEVGRRQRVEPRQIVGALANEGGLSREDFGAIQIRP
DFSIVELPADLSKDVLDRLVDTRISGKLIEIRPDRRSAPRRDDRDERPARKPRHQ
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgacacgaatgccccgatcgaggcagacactgccgacgctgtgactgctttc
tccgacctggggctcagtgacgcggtcctcaaagccgttcgcgagatcggctacgagacg
ccctccgcaatccaggcggccaccattcctccgctgctcgccggccgcgacgtcgtcggc
ctcgcccagacgggcaccgggaagaccgcggcgttcgctctgcccatcttgtctcggctc
gacgtctcgcagaagaagccgcaggccctcgtcctctcccccacgcgcgagctcgcgctg
caggtctgcgaggcgttcgagcagtacgcctctcagatgcgcggcgtgcacgtgctgccg
gtctacggcggccaggcgtacggcgtccagctgtcggcgctccgccgcggcgtccacgtg
gtcgtcggaacgcccggtcgcatcatggaccacctcgccaaaggcaccctcgacctctcc
gagctgaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggctttgcggaa
gacgtcgagacgattctcgccgacaccccggacgacaagcaggtcgcgttgttctcggcc
acgatgcccgcgcagatccggcgcatctccaagcagtacctgaacgacgccgaagagatc
acggtcaagaacaagaccacgacgtccgccaacaccacgcagcgctacctgatggtgtcg
tatccgcagaaggtcgacgccctgacccggatcctcgaggtggagaacttcgaaggcatg
atcgtcttcgtccgcaccaagagcgagaccgagaccctggccgagaaactccgtgcccgc
gggtactcggccgcggccatctccggcgatgtcgcgcaggctcagcgcgagcgcaccgtc
aatcagctcaagtcgggcaagctcgacatcctggtcgccacggacgtcgctgcacgcggg
ctcgacgtcgaccgcatctcgcacgtcgtcaactacgacatcccgatcgacaccgagtcg
tacgtgcatcgcatcgggcgcaccggccgagccggccgttcgggcgccgcgatcagcttc
gtcacgccgcgcgagcgccgtctcctcggcgcgatcgagaaagccacgcgtcagcctctc
accgagatgcagctgccgagcgtcgaggacgtcaacgtgactcgcctggcgcgcttcgac
gacgccatcacggcggccctcgggcagcaggaccgcatctcggccttccgcgacatcgtc
gggcactacgtcgagcaccacgatgtgccggaggccgacgtcgcggccgcccttgccgtc
gtcgcgcagggagacactcccctgcttctcgacccggctgccgagcggcctgcgcgtcgg
gagcggcccgagaggtcgtccgaccgctcgttcgaccgcgacgaccgggctccgcgctcg
ttcgatcgcgacgaccgcggcgagcgacccgagcgtcggcctcggacgacgaagcccatg
tcgccctaccgcatcgaggtgggccgtcgtcagcgggtcgaaccgcgacagatcgtcggt
gctctcgccaacgagggcggcctcagccgggaagatttcggcgccatccagatccggccc
gacttctccatcgtcgagcttcccgccgatctgtcgaaggacgtcctcgaccggctcgtc
gacaccaggatcagcggcaagctgatcgagatccgccctgatcgccgcagcgcaccccgc
cgtgacgaccgcgacgagcgtccggcccgcaagccccgacaccagtaa
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