Fibrobacter succinogenes: FSU_0577
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Entry
FSU_0577 CDS
T02105
Name
(GenBank) putative pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
fsc
Fibrobacter succinogenes
Pathway
fsc00040
Pentose and glucuronate interconversions
fsc01100
Metabolic pathways
fsc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
fsc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
FSU_0577
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
FSU_0577
Enzymes [BR:
fsc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
FSU_0577
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
SspH
Motif
Other DBs
NCBI-ProteinID:
ADL26594
UniProt:
C9RJS5
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All DBs
Position
complement(644028..645797)
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AA seq
589 aa
AA seq
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MNYLLSKTMRVAATFAALAVTTAAVPAFAVTSPDFPMAGFATQNGGTTGGKGYSEVTVDN
VNDLKSYAKAGNKIIYVKPGTYMGPVEVGSNVTIYGYQGAIIAQPASGSAMKLSGSKNVI
IRNLKFKGVGAHDDDDEDCLQVNHESKNVWIDHVDVYDGHDGNLDITNASDYVTISWTKF
SYTSASTGHQFSNLIGNSKTKTSDRGHLNVTIHHTWWADGVVERMPRVRFGKVHVANNLF
DSKNASYCVRAAVEADIRIERNVFIGVQKALDLYTSDGTITAAQMIENYEENVKKPQAGT
GTAFKPSYSMSLTDVSTQAKAYALRDSIKLYAGATLPDPGKSQTVTPASSSSEVQSSSSV
AVSSSSVAKSSSSVAQSSSSQAVSSSSQGEAVSGTATLTKHGSGSAKQEVKQGESIEEFY
FTVAGATGATVTGLPEGVSGTMKGSDFYISGTVAQNAAVGAYNFTVTTTGATTNATKNGT
ITVVGANGAVAESSSSSVESSSSKVDSSSSSEQGTTSLDVATVASHFNVSVNGRVLTVQG
ATQTAYLLDAQGRLITKVQSLGRESLITVPRAGMYLLRVGNEARRITVR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaattatttgctttctaaaacgatgcgtgtggccgcaactttcgcggctttggctgtc
acaacggctgcggttcctgcgtttgcggtgacttcgccggattttccgatggcgggtttt
gccacgcagaatggcggcactacgggcggcaagggctactccgaggttacggttgacaac
gtgaacgacctcaagagctacgccaaggcgggcaacaagattatctacgtgaagccgggt
acgtacatgggtccggtggaagtcggtagcaacgtgacgatttacggctaccagggcgcc
atcattgcgcagcccgcttcgggtagcgccatgaaactgagtggctcgaagaacgtcatc
atccgcaacctgaaattcaagggtgtgggtgcgcacgatgacgatgatgaagattgcctc
caagtgaatcacgaatccaagaacgtgtggattgaccatgtcgacgtgtatgacggtcac
gacggtaacctggacattaccaatgcttcggactacgtgacgatttcttggaccaagttc
agttacacctctgcatcgacaggtcaccagttcagcaacttgattggcaacagcaagaca
aagacgagcgaccgtgggcacctaaatgtcacgattcaccatacgtggtgggcggatggc
gtggtggaacgcatgccgcgtgtgcgttttggcaaggtacatgtggcgaacaacctcttc
gatagcaagaacgcgagctactgcgtgcgtgcggcagtagaggctgatatccgcattgaa
aggaacgtgtttatcggtgtgcagaaggcgcttgacctttacacgagcgatggaacgatc
acggcggcgcaaatgattgaaaattacgaagaaaacgtgaagaaaccgcaggccggtacg
ggcacggcgttcaagccgagttattccatgagccttacggacgtgagtacgcaggcaaag
gcttatgcccttcgtgattccattaagttgtacgcaggagcgacgctccctgatccggga
aaatctcaaacggtgacgcccgcatcttcttcgagcgaagtacagtctagttccagcgtg
gctgtgtctagttcaagtgtcgcgaaatccagtagcagtgtcgcgcagtccagctcctcg
caggctgtatctagttcctcgcagggggaggctgtttcgggaacggcgacacttactaag
cacggctcgggtagcgctaagcaagaagtcaagcaaggtgaatctatcgaagaattttac
tttactgtcgctggcgccacgggtgcgactgttacgggactgcctgaaggtgtttcagga
acaatgaagggtagtgatttttacatctcaggtacggtcgctcaaaatgctgctgtgggg
gcgtacaattttaccgtaacgacaactggggctacgacaaatgcgaccaagaacggaact
attacggttgttggtgcaaatggagcggttgcagagtctagctctagttctgttgaatca
agttctagcaaagttgattcgagctctagctcggaacaaggcacgacttcgttggatgtc
gctacggttgcttcgcatttcaatgtttctgtcaacggtcgagttcttaccgtacaaggt
gctacgcaaacggcgtatctcctggatgcccagggcaggctgattacaaaagttcagtct
ttgggtcgcgaaagcttgataaccgttcctcgtgcgggcatgtacctcttgcgagtcggt
aacgaagcgcgacgcataactgttcgataa
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