Fibrobacter succinogenes: FSU_1122
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Entry
FSU_1122 CDS
T02105
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fsc
Fibrobacter succinogenes
Pathway
fsc03030
DNA replication
fsc03430
Mismatch repair
fsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSU_1122 (dnaE)
03430 Mismatch repair
FSU_1122 (dnaE)
03440 Homologous recombination
FSU_1122 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsc03032
]
FSU_1122 (dnaE)
03400 DNA repair and recombination proteins [BR:
fsc03400
]
FSU_1122 (dnaE)
Enzymes [BR:
fsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FSU_1122 (dnaE)
DNA replication proteins [BR:
fsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FSU_1122 (dnaE)
DNA repair and recombination proteins [BR:
fsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FSU_1122 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADL27003
UniProt:
D9S9H8
LinkDB
All DBs
Position
complement(1256823..1260680)
Genome browser
AA seq
1285 aa
AA seq
DB search
MAFVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKK
RKEQGLPPVKTVYGCHIYVDTPSASQKDPTTFERLTLLVENEKGYYNLLRIVSYRYEDGE
RWAEIPSVPLETINEFKEGIIAIAGDYFSCYGQNVASGRDSLALEYMDRLNEIFDHDHLY
ISVCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDATSHKILRCISLKVTLNG
FEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTGIGDEFWPRFKIPD
EFLASEEYQNIKAIMKAEYDAEYPVVRERELKGVIKDRKKKVKANYCAEKGIAEDALTDA
DNAEIDRLSQPEFFDADDNKAWEKNIHRWCKPGGDADIYITHLCNERLKWRFPDEDFKFP
AHETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGPGRGSAAGSLVTYIIG
ITDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTDKYGKECVGQIITYGM
LKSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKDKKGNNLEDGYSPEPL
QAMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNLAPLYRAAPEDTPVVMY
DKHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNRNIKLVMNKIPIDDKATFELLGKGLT
TTVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQIPHFIARKNGKEEIDCYHPD
LEQVLGETYGVIVYQEQVMKLAQILGGYSLGGADNIRRIMAKKMPEKMAKLEPEFFQKCL
DKGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYAYVAYQTAYLKTHYGPEYMAASMTSKMG
KTEDTVTIILECKRLGIPVLSPNINTSLGVFSANTKGQILYGLAGIRNVGIAVVEDVVAE
RERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNKKVLECLIMAGALDDLPGSRAVQCATVD
RALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTAEVLEEAEEWTAMEMLNKERSVLGLFLS
GHPLDEFRPELTGFTSCSLSEDEITRYVGDTVVVGGVVIRMRSIETKRGDTIGSGAIQDF
QGEIEMFFKKDVWERLRDTVSVDDRVLVKGVLEQQRDRDGYQIIVEEVIQLDRVRCDMVD
YIHANFTVGMLTDEFLDKLEVEMKANLADEYCHGCQMVFHLEADSGFEHVVVLKKYKVVY
TQELLQWLKTDLGALKVWVSNRAKR
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcgttcatttacagactcattctgaattttcgattttgcaggcttcggcccga
cttgatgatattttggcggctgccgcagcagaaaacgcacctgctgttgctttgacggac
catggtgccatgtttggtattcttgaaatccagacgcgtggcaaggaactgaacaaaaag
cgcaaggagcaggggctcccgccggtcaagacggtttatggctgtcacatttacgtggac
acgccgagcgcaagccagaaagatccgactacttttgaacgattgacgctcctcgtcgag
aacgaaaagggctattacaatctgctccgcattgtgagttaccgctatgaagacggggag
cgctgggcagaaattccgtccgtgccgctcgagacgattaacgagtttaaggaaggcatt
atcgccattgcgggcgattattttagctgttacggccagaatgtggcatcgggcagggat
tcccttgcgctcgagtacatggaccgcctgaacgagatttttgaccacgaccacctgtac
atctcggtttgcgataacgggattccgcagcaaaagcacgtgaacgaattcaacgtggaa
cttgcgaaaaagtatggtcgtgaagtcgttgccgtgggcgatgtccattacattaagccc
gaagacgctacatcgcacaagattctgcgctgcatctcgctcaaggtcacgctgaacggt
ttcgaagacaagcgcttcccgacggaaaagttctatttccgcaccgagaaggaaatggtg
gaactgttcgggcatatcccgggcgctatcgagaatacggtcaagattgccgagcgctgt
aactttaccgtgaaaaccggtatcggtgatgagttctggccgcgtttcaagattcctgat
gaattcctcgcttctgaggaataccagaacatcaaggccatcatgaaggcggaatacgat
gcggaatatccggtcgtccgtgaacgtgaactcaagggtgttatcaaggaccgcaaaaag
aaggtcaaggcaaattactgtgccgaaaaaggcattgccgaagatgcgctgaccgatgcg
gacaatgctgaaatcgaccgcctctcgcagccggaattctttgacgctgatgacaacaag
gcgtgggaaaagaacatccaccgttggtgcaaaccggggggcgatgccgatatctacatc
acgcatctttgcaatgaacgcttaaagtggcgattccctgacgaagattttaagttcccg
gctcacgagacgaacgtgggcaagcgcatgtacaaggagctcaactgtatccgcaacatg
aacgtcgcgggttacttgctcattgtgtgggacttcattaactggtctcgtgaacatggc
attcccgtggggccggggcgtggttctgctgctggttccttggtcacttacatcatcggt
attaccgacattgacccgcttactttcgacctcctttttgaacgattcctgaacccggaa
cgtgtgtccatgccggatatcgatacggactttgctgaccgtgaccgcggccgcgtgatc
cagtacgtgacggacaagtacggcaaggagtgcgtgggccagattattacctacggcatg
ctcaagtcgaaggcggtgattacggacgtcgcgcgcgtgctcgggattcctcctgccgaa
gcgaaggccattacaaagctcttcccgcagcgtacgttgaactttagcctaaagcaggcc
tggacgggtaaggacaagaagggcaacaacctcgaagatggttatagcccggaaccgttg
caggcgatgattggcagccgcgcaagctaccagaacctttgggatgtcgcaaagcgactt
gaagatttgccgcgccagacgggcgtgcatgcttgcggcgtggtgattacgccgactccg
atttacaaccttgctccactttaccgagccgctccggaagatacgccggtggtgatgtac
gataagcactacgccgaagacatcggacttttgaagatggacttccttgggcttatcaac
ttgtccatcattcaggatacggtgaagatggttgaacagaaccgcaacatcaagcttgtg
atgaacaagattccgattgatgacaaggcgacgttcgaacttttgggcaagggccttacg
acgacggtgttccagttcgaatctccgggtatgcagaagtacctgcgcgaactgaagccg
acccgaatctttgaccttatcgctatgaacgccctgtaccgaccggggccgattgaccag
attccgcacttcattgcccgtaagaacggcaaggaagagattgactgctaccatccggac
ttggaacaggtgcttggcgaaacgtacggcgttatcgtgtaccaggaacaggtgatgaag
ctcgcccagattctgggtggctactcgctgggtggcgctgacaacatccgccgtatcatg
gctaagaagatgccggaaaagatggcaaagctcgagccggaattcttccagaagtgcttg
gacaagggctacgacaaggcgatgatccagaaggtctgggacgccgtgctcccgttctgc
ggatacgcatttaacaagagccatgctgcagcttacgcttacgtggcttaccagacggcg
tacctcaagacgcattacggcccggaatacatggctgcctctatgacctccaagatgggt
aagaccgaagatacggtgaccatcattttggaatgcaagcgccttggaatcccggtcttg
tcgccgaacatcaacacgtctttgggtgtgttctcggcgaatacgaagggccagattctt
tatggtctcgcgggtatccgcaacgtgggtatcgcggttgtcgaagacgtggtcgcagaa
cgcgaacgccgtggcatctacaaggacatctttgatttctgcaagcgcgtgacggaatac
caggcggctcagcctgaaaaacgcccgccgctcaataagaaagtcttggaatgcttgatc
atggcgggcgccttggacgatttgccgggtagccgtgctgtgcagtgtgctacggtggac
cgtgctttggaagtcgccatgcgcagccaggaagacaaggccaagggccaggtctcgctg
tttgacttgggtggccctgccgccatgccgaacactgctgaagttttggaagaagccgaa
gaatggacggcgatggaaatgctcaacaaggaacgcagcgtgcttggcttgttcctctct
gggcacccgcttgatgaattccgcccagaactcacgggctttacgagctgctccctctcg
gaagacgaaattacccgctatgtgggcgatacggtcgtcgtgggcggtgtcgttatccgt
atgcgctccatcgaaacaaagcgcggcgatacgattggctctggtgctatccaggatttc
cagggtgaaatcgaaatgttcttcaagaaggacgtctgggaacgcttgcgcgatacggtt
tctgtcgatgaccgcgtgcttgtgaagggcgtcctggaacagcaacgcgaccgcgatggc
taccagattatcgtcgaagaagtcatccagcttgaccgcgtacgttgcgacatggtggat
tacatccatgcgaacttcaccgtcggcatgcttacagacgagtttttggacaagcttgaa
gttgaaatgaaggccaatttggccgatgaatactgccatggttgccaaatggtgtttcat
ttggaggcagattccggatttgagcatgtcgttgtcctgaaaaaatataaagttgtatat
actcaggaattgttgcagtggcttaaaacagatttaggcgctctgaaggtttgggtatcg
aatcgtgcaaaacgttaa
DBGET
integrated database retrieval system
