Fibrobacter succinogenes: FSU_2451
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Entry
FSU_2451 CDS
T02105
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fsc
Fibrobacter succinogenes
Pathway
fsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSU_2451 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsc03019
]
FSU_2451 (deaD)
03009 Ribosome biogenesis [BR:
fsc03009
]
FSU_2451 (deaD)
Enzymes [BR:
fsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSU_2451 (deaD)
Messenger RNA biogenesis [BR:
fsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSU_2451 (deaD)
Ribosome biogenesis [BR:
fsc03009
]
Prokaryotic type
rRNA helicases
FSU_2451 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Cas3-like_C_2
HEM4
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADL26463
UniProt:
D9S4W5
LinkDB
All DBs
Position
complement(2834340..2836559)
Genome browser
AA seq
739 aa
AA seq
DB search
MESGANSKIKKGEKVEFINDDETTSEQEKPAEAEDATAATDSANLNEDPADEEDVGDESL
VTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLL
SRINFNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRK
ASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRAL
FSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEF
DGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVA
ARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEKATR
QPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRALAAEGCNMKDGVALED
GSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGESRNEDFGLN
SEEQKRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNIGRIKL
FDKFSTVELPNTLPQDVLDILSEMTIRGNDARFRVMTDEPPEGPAPGTRPHASREERRSF
HRDRKGGFHDDERRGGFRKNREGGDRFGDKPFENRKARRERQFADRKPSKFEDKPFRKDR
DERSFGDKPFRKTRRFGRV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
ttggaatccggtgcaaactccaaaattaagaaaggcgaaaaagtcgaatttatcaacgat
gacgaaacgactagcgagcaagaaaagcccgctgaagcagaagacgcaacagccgcgact
gattcggcaaacttaaatgaagaccccgcagacgaagaagatgtcggcgatgaatctttg
gtgacgttcgacgatcttggcctctctccggaagttctcgaagcggtcaaactcgccggt
tacgaaacgccctcacccatccaggctaaggccatcccggcgcttttgcagggcgcaaac
cttctcggaacagcacagacaggtaccggcaagacagcagcattctcgctcccgctcctt
tcgcgcatcaacttcaacggacgcgaaacgtctatgctcgtgctcacgccgacacgcgaa
cttgcgatccaggtttcagacgccatccagcaatacgccgtcaagatgcaaaacgtgacg
gttgttccggtctatggcggtcaggatatcgctatccagttgcgcgccctcaagcgcaag
gcaagcatcgtcgttgccacaccgggccgtttgattgaccacatcaagcgcggttctatt
tcgctcggagcagtcaaagccatcgtcctcgacgaagccgatgaaatgctcgacatgggc
ttcatggaagacgtggaaaccatcctcaaggaaatccccgccgacgcccagcgcgccctc
tttagcgccaccatgccggacagcgtcaagaagattatcgaccagcacctgggtgaatac
gaagaagcccgcatcgaaggcaagacgaccacggtcgaaaacatttgccagcgctacttg
ctcgtgaaaaacgaacacaagatcgaagcgctcgcccgcgtgctcgaaggcgaagaattt
gacggcgtactcattttcgtgcgcaccaagcagaacaccaccgaagtggccgaaaagctc
gaaagccgaggcttcaacgtggccccgcttaacggtgacctcgcccagtccatgcgcgaa
cgcaccatcaaccgtctcaagatgggcaagctcgatatcgtcgtcgcaacagacgtcgcc
gcccgcggtattgacgtggaccgcatttcgctcgttgtgaactacgacattccgtacgac
accgaatcctacgtgcaccgcattggccgtacaggccgtgcaggccgcagcggtaacgcc
atcttgttcatcacgccgcgtgaaaagcgcatgctcaagaccatcgaaaaggcaactcgc
cagccgattgacgtgatggaaatgccgacctccgaacaaattagcaagaagcgtgttgac
gcattcaaggctaaagtcaagagcgttgtaagctacggtgaactcgaccagttcaaggaa
ctcgtccgcgcactcgctgcagaaggttgcaacatgaaggatggcgtagccctcgaagat
ggctccgtcaacgaaatgaccgccgaagacatcgctgccgccgtcatcaagatgtaccag
aaaaaacagccgcttttcccgaacctcccgccgctcgaagctccgaaggaacgtcgcgaa
aaagtccgcacaggcagagacttcctcggcgaaagccgcaacgaagatttcggcctcaat
agcgaagagcagaagcgcatgcgtaaggaacgcaaagaaggcctaaacggcgtcgaagaa
ggcttcttgcgctattaccttggcgttggccgcatcgaccatgtgacccctcgcgacatc
gtgggtgcaatcgccggcgaagcaaacatcaacagcagcaacatcggccgcatcaagctc
tttgacaagttcagtaccgtagaactcccgaacacactcccgcaagacgttctcgacatc
ttgtccgaaatgaccattcgtggcaacgatgcacgcttccgcgtgatgaccgatgaacca
cccgagggtcccgcaccgggaacaagaccgcacgctagccgcgaagaacgccgcagtttc
catcgcgaccgcaagggaggcttccacgacgatgaacgccgtggcggattccgcaagaat
cgcgaaggcggagaccgctttggcgacaagccttttgagaaccgcaaggcacgccgcgag
cgccaattcgccgaccgcaaacccagcaagttcgaagacaagcccttccgcaaagaccgc
gacgaacgcagctttggtgacaagccattccgcaagacacgccgtttcggaagagtctaa
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