Flavobacterium sediminilitoris: LXD69_09715
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Entry
LXD69_09715 CDS
T08185
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fsd
Flavobacterium sediminilitoris
Pathway
fsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXD69_09715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsd03019
]
LXD69_09715
03400 DNA repair and recombination proteins [BR:
fsd03400
]
LXD69_09715
Enzymes [BR:
fsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LXD69_09715
Messenger RNA biogenesis [BR:
fsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LXD69_09715
DNA repair and recombination proteins [BR:
fsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LXD69_09715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF2582
Motif
Other DBs
NCBI-ProteinID:
UOX32328
UniProt:
A0ABY4HHZ6
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All DBs
Position
complement(2169548..2171437)
Genome browser
AA seq
629 aa
AA seq
DB search
MSETLQILQKYWKHENFREPQEEIINSVLKNKDTFALLPTSGGKSVCYQVPAMVKEGICL
VISPLIALIKDQVQNLQSRNIKAIALLGGISQNEIIELLDNCQFGNYKFLYLSPERLQQD
WIIERLKQLPINLIAIDEAHCVSQWGHDFRPAYLKINLLKAHFKTTPFLALTASATERVQ
KDIIENLALENPIVFKKSFARENLAYHVINTEDKFHKIKQILTKNPQSSIIYVRNRKSCI
EISNQLKALNISSTYFHGGLNIKEKDTNMALWMQNKVQVIVATNAFGMGIDKPDVKTVIH
IQLPENLENYYQEAGRAGRNNEKAFGILLIDSNDIKAAKNQFISVLPDKTFLKEVYIKLN
NYFQIAYGEGFNETFSFNLNQFCTQYKFPVLKTYNALQFLDRQAIISLQNEFSEKISIQF
TTPSKEIIRYMSLNPHSENIITTILRTYSGIFELETQINTSLIAKKANTTEDNVLKVVTN
LEKEHYITLQVQNNDSSITFNEVREDALTINRVSKFLEKQNDLKTNQLNSIIHYAKTNAC
KSKLLLEYFDEKEITECGICSFCISKKNNKSTNSILVEEVFHLLKHSNLTSREIESQLSI
TTEDTIFAIQILLEKDKIAINNYNQYYLK
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaactttacaaattcttcaaaagtactggaaacacgaaaattttagagaaccg
caagaagaaatcataaattctgttttaaaaaataaggatacatttgcattacttcctaca
agcggtggaaaatctgtttgttatcaagttcctgcaatggtaaaagaaggcatttgtctt
gttatttctccattaattgctcttataaaagatcaggttcagaatttgcaaagcagaaac
attaaggcaattgcacttttaggtggtatttcccaaaatgaaattatagaattattagac
aattgccagtttggaaattacaaatttctatacctttcacctgaaagattacaacaagac
tggattattgaaagactaaaacaattgcctataaacttaattgccattgatgaagcacac
tgtgtaagtcaatggggacatgattttagaccggcatatttaaaaataaatttacttaaa
gcacatttcaaaacaactccatttcttgctttaactgcttctgctacagaacgtgttcaa
aaagatataatagaaaatctcgcattagaaaatccaattgttttcaaaaagtcttttgcc
agagaaaacctagcttatcatgtaattaatactgaagataaatttcataagataaagcag
attcttacaaaaaatcctcaatcgagtatcatctatgttcgaaatagaaaatcatgcatt
gaaatatcaaaccaactaaaagcattaaacatttctagcacatattttcatggaggatta
aatataaaagaaaaagacacaaacatggcactttggatgcaaaacaaagttcaagttata
gtagcaacaaatgcatttggaatgggaattgacaaacccgatgttaaaacagtaattcat
atacaattacctgaaaacttagaaaattattatcaagaagctggtagagctggtcgaaat
aacgaaaaagcatttggaattcttttaattgattcaaacgacatcaaagcagctaaaaat
caatttatttctgttcttcccgacaaaactttcttaaaagaagtatacattaaactaaac
aattattttcaaattgcttatggagaaggctttaacgaaaccttttcttttaatctaaat
cagttttgtacacaatataaatttcctgttctaaaaacatataatgctcttcaattttta
gacagacaagctattatttcacttcaaaatgaattctctgaaaaaatcagcatccaattc
acaactccaagtaaagaaataatacgctatatgagtttaaatcctcattcagaaaacatt
atcacaaccatactaagaacttattctggaattttcgaattagagacacaaataaacact
tctctcattgcaaaaaaagcaaatactacagaagacaacgtcttaaaagtggttaccaat
ttagaaaaagaacactacattactcttcaagttcaaaataatgacagtagtataacattt
aatgaggtaagagaagatgccttaaccattaacagagtttctaaatttttagaaaaacag
aatgatttaaaaacaaatcaattaaacagtatcattcattatgcaaaaacgaatgcttgt
aaaagtaaattactcttagaatattttgatgaaaaagagataaccgaatgtgggatttgt
tcattctgcatttctaaaaaaaacaataagagtacaaattctatactagttgaagaagtt
tttcatttattaaaacattcaaacttaacttcaagagaaatagaaagtcaactttcaata
acaacagaagatactatctttgccattcaaatccttcttgagaaggataaaatagctatc
aataactacaatcaatattacttaaaataa
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