Flavobacterium sediminilitoris: LXD69_13495
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Entry
LXD69_13495 CDS
T08185
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fsd
Flavobacterium sediminilitoris
Pathway
fsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXD69_13495 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fsd03021
]
LXD69_13495 (rho)
03019 Messenger RNA biogenesis [BR:
fsd03019
]
LXD69_13495 (rho)
Transcription machinery [BR:
fsd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LXD69_13495 (rho)
Messenger RNA biogenesis [BR:
fsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LXD69_13495 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
NACHT
AAA
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
UOX33047
UniProt:
A0ABY4HL41
LinkDB
All DBs
Position
2951752..2953476
Genome browser
AA seq
574 aa
AA seq
DB search
MFDIEVLKEMKLSDLQEIAKVAKVKKYRTLKKEDLIYQILDVQAANPDTIKAEDSFKKEV
EADTKPKRTRVSTTKVEKKVQPVKEETLFSEEKEIPVKPIAKPIPNKPVKQAPAKVVKEK
QAPIAKEEVSKEVVEKKDNPKEVLSEATKQSTPETPSAKQNLPQKNVNHKANQNNPNHPA
YKKPNGNNGNSNPKANFREPDYEFDGIIESEGVLEMMPDGYGFLRSSDYNYLASPDDIYL
STSQIRLFGLKTGDTVKGVVRPPKEGEKYFPLVRVLKINGHDPQVVRDRVSFEHLTPVFP
KEKFRLAEKGSTLSTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDVANAIAANHPEVYM
IVLLIDERPEEVTDMQRSVKAEVVASTFDREPQEHVKIANIVLEKAKRLVECGHDVVILL
DSITRLARAYNTVQPASGKVLSGGVDAGALQKPKRFFGAARNVENGGSLSIIATALTDTG
SKMDEVIFEEFKGTGNMELQLDRRISNKRIFPAIDLVSSSTRRDDLLLDDNAIQRMWILR
KYLADMNPIEAMEFIEKRIKTTRNNEEFLISMNE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatattgaagtattaaaagagatgaaactctctgacttacaagaaattgcaaaa
gttgcaaaagttaaaaaatatagaacactaaaaaaagaagaccttatttatcaaatttta
gatgttcaagcggctaaccctgatacaattaaggctgaagatagctttaaaaaggaagta
gaagccgatacaaagcctaaaagaactagggtttcaactactaaagtagagaagaaagtt
cagccagttaaagaagaaactcttttctcagaagaaaaagaaattcctgtaaaaccaata
gctaaaccaattccaaataaacctgttaaacaggctcctgctaaagtagttaaagagaag
caagctcctattgctaaagaagaagtttctaaagaggttgtagaaaagaaagataatccc
aaagaagtattatcagaagcaacaaaacaaagcactccagaaacaccatctgctaaacaa
aatttacctcaaaaaaatgtaaatcataaagcaaatcagaataatccaaatcatcctgca
tataaaaagccaaatggtaataatggaaattcaaatcctaaagcaaactttagagaacca
gattatgaatttgatggaattattgaaagtgaaggtgttttagaaatgatgccagatggt
tatggttttcttcgttcatcagattataattacttagcttcaccagatgatatttattta
tcaacttctcaaataagattatttggattaaaaacaggagatacagtaaaaggagtagta
cgtcctccaaaagaaggagaaaaatatttcccattagttagagtcttaaagataaatggt
catgatcctcaagttgttcgtgatagagtatcatttgaacacttaacgcctgtttttcct
aaagaaaaatttagactagcagaaaaaggaagtacattgtctactcgtattattgatttg
ttttctccaataggaaaaggacaacgtggaatgattgttgcccaacctaaaacaggtaaa
acaatgttgctaaaagatgtagcaaatgcaattgcagctaatcatccagaagtatatatg
attgttttgctaattgatgaaagaccagaggaagttacagatatgcaacgtagcgttaaa
gcagaagttgtagcctctacttttgatagagaaccacaagagcatgtgaaaattgctaat
atcgttttagaaaaagcaaagcgtttagtagaatgtggacatgatgttgtaattctttta
gattcaattactcgtttagcaagagcttataatacggtacaacctgcttcaggaaaagtg
ttgagtggtggagttgatgcaggagctttgcaaaaacccaaacgtttctttggagctgct
cgtaatgtagaaaatggaggttctttaagtattattgcaactgcacttacagatactggt
tctaaaatggatgaagttatctttgaagaattcaaaggaacaggtaatatggagttacaa
ttagacagaagaatttctaataaacgtattttcccagcaattgatcttgtttcgtctagt
acgcgtagagatgatttactattagatgataatgctattcaaagaatgtggatattacgt
aaatatttagcagatatgaatcctattgaagctatggagtttattgagaaaagaattaaa
actactcgtaataacgaagagtttttaatttcaatgaatgaatag
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