Flavobacterium sediminilitoris: LXD69_14355
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Entry
LXD69_14355 CDS
T08185
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fsd
Flavobacterium sediminilitoris
Pathway
fsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXD69_14355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsd03019
]
LXD69_14355
Enzymes [BR:
fsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LXD69_14355
Messenger RNA biogenesis [BR:
fsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LXD69_14355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_30
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UOX33215
UniProt:
A0ABY4HKZ0
LinkDB
All DBs
Position
complement(3139134..3140384)
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AA seq
416 aa
AA seq
DB search
MTFKDLHLISNIQEALKEEGYENPTPIQEQAIPEILAEQDLVACAQTGTGKTAAFAIPII
QLIHKIVGSAKKVKRIRTLVITPTRELAIQIGESFNTYGKYTNIKSLVIFGGVNQIPQVD
QLKKGVDILIATPGRLLDLYKQGFIDLNHMHQLVLDEADQMLDMGFINDVKKIIKLTPDN
RQTLLFSATMPFAIRELADSFLTNPKYVSVAPISSTAENVSQKVYFVDKSDKRNLLYHLI
RNDGIKNVLVFTRTKHGADNVVKALKKNGVESGAIHGDKSQNARQRVLESFKNQEIPVLV
ATDIAARGIDIENLPFVINFDIPNISETYVHRIGRTGRAGNSGLAISFCGKDEKAYWQDI
EKLIRMKIKVVEDHPYPWKEEEKKEGQKPDLRNKNKSSNNKSRKSDNSKKNKKRWY
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagatctacatttaattagcaatatacaagaagctctaaaagaagaagga
tatgaaaacccaacacctattcaagagcaagctattcctgaaatattagcagaacaagat
ttagttgcttgtgcgcaaacaggaacaggaaaaacagccgcttttgcgataccaattata
cagttaatacacaaaattgttggttcagcaaaaaaagtaaaaagaattagaactttagtt
attacacctactcgtgaattagctatacaaataggagaaagttttaatacttatggaaaa
tatactaatataaagtctttagttatttttggtggtgttaatcaaattcctcaagttgat
caattaaaaaaaggtgtagatattttaatagctactccaggaagattattagatttatac
aagcaaggatttatagatttaaatcacatgcatcaattagttttagatgaagcagatcaa
atgctcgatatgggatttattaatgatgtaaaaaagataattaaacttactcctgataat
agacaaacattattattttctgcaacaatgccttttgcaataagagaattagcagatagt
tttttaactaatcctaagtatgtttcagtagctccaatttctagtacagcagaaaatgtt
agtcaaaaagtatattttgttgataaatctgataaaagaaacttactctatcatttaatt
agaaatgatggaattaaaaacgtgttagtatttacaagaacaaagcatggtgctgacaat
gttgttaaagctttaaaaaagaacggtgttgaatctggagctattcatggagataaatct
caaaatgcaagacaacgtgttttagaaagctttaaaaatcaagaaattcctgttttagtt
gctacagatattgcggctcgtggaattgatattgaaaatttaccttttgtaattaacttt
gatattccaaatatatctgaaacttatgttcatagaattggacgaacaggaagagctgga
aactctggtttagccatttctttttgtggaaaagatgaaaaagcatattggcaagatatt
gaaaagctaattagaatgaaaatcaaagtggttgaagatcatccatatccttggaaagaa
gaagaaaaaaaggaaggtcagaaacctgatttgagaaataaaaataaatcttctaataat
aaatctagaaaatcagataattctaaaaagaacaagaaacgttggtattaa
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