Flavobacterium sediminilitoris: LXD69_16245
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Entry
LXD69_16245 CDS
T08185
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fsd
Flavobacterium sediminilitoris
Pathway
fsd03030
DNA replication
fsd03430
Mismatch repair
fsd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LXD69_16245
03430 Mismatch repair
LXD69_16245
03440 Homologous recombination
LXD69_16245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fsd03032
]
LXD69_16245
03400 DNA repair and recombination proteins [BR:
fsd03400
]
LXD69_16245
Enzymes [BR:
fsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LXD69_16245
DNA replication proteins [BR:
fsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LXD69_16245
DNA repair and recombination proteins [BR:
fsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LXD69_16245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
GIY_YIG_2
RNase_H_2
DNA_pol_A_exo1
DUF7508
DUF5524
T5orf172
Motif
Other DBs
NCBI-ProteinID:
UOX33571
UniProt:
A0ABY4HMQ8
LinkDB
All DBs
Position
3534225..3535586
Genome browser
AA seq
453 aa
AA seq
DB search
MYAILDIETTGGQYNEEGITEIAIYKFDGHEIVDQFISLVNPEKPIQPFVVKLTGINNAM
LRSAPKFYEVAKRIIEITEGCVLVAHNAAFDYRILSTEFRRLGYTYKKSTLCTIELAKKL
IPEQPSYSLGKLVRSLGIPIADRHRANGDAMATMKLFRLLLSKDSEKEIVKSYVKTEVKA
GILPKLLDIVESLPSKIGIYYIHNEKGDVIYIGKSKNIKKRVNQHFTGTSPKSKKIQREV
FTVTFEETGNELVALLKESEEIKINKPIYNRAQRKTLFQWALYAEKDSKGYIILKISKSD
GRKKEITSFTSLQEGRKTLFKITEEYNLCQKLNGLYDTKKGCFQYDVKTCFGACIEKEKP
EDYNKRVNEFIDQNTFLNNNMIIIDKGRSHDERSAILIENGVYKGYCFYGLNYQINNIEI
LKKLIIPMQNNRDTKNIIQGYLRKRKVMKVVTF
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgcaatactcgacatagaaactacaggtggacaatataacgaagaaggaattact
gagattgccatctataaatttgatggacatgaaatagtagatcagttcattagtttagta
aatcctgaaaaaccaattcagccatttgtagtaaaattaactggaataaataatgcaatg
cttcgttcagcaccaaagttttatgaagtagcaaaacgtattattgaaattacagaaggt
tgtgtacttgttgctcataatgctgcttttgactatcgcattttaagtaccgaattccga
agacttggttatacgtataaaaaatcgacactttgcaccattgaattggctaaaaaatta
attccagaacagccttcatatagtcttgggaaattggttcgctcacttggaattcctatt
gctgatagacatagagcaaatggagatgctatggcaacaatgaaactttttcgattatta
ctttcaaaagatagtgagaaagaaattgtaaaaagttatgtaaaaacagaagtaaaagca
ggaattcttccaaaattacttgatatagttgaatcattaccttcaaaaataggtatctat
tatattcataatgaaaaaggagatgttatatacattggtaaaagtaaaaacataaaaaag
agagtaaaccagcatttcacaggtactagccctaagagtaaaaaaattcaaagagaagtc
tttactgtaacttttgaggaaacaggaaatgaattagtagctcttttaaaagaaagtgaa
gagattaaaattaataaaccaatatacaatagagcacaacgaaaaacattatttcaatgg
gcattgtatgctgaaaaagattctaaaggttatataattttaaaaatttccaaatctgat
ggcagaaaaaaagaaatcacttcatttacttctcttcaagaaggaagaaaaacacttttt
aaaataacagaagaatataatttatgccaaaaattaaatggattatatgacactaaaaaa
ggatgttttcaatatgatgtaaaaacttgttttggagcttgtattgaaaaagaaaaacca
gaagattataataaaagagtaaatgaatttatagatcaaaatacttttttaaacaacaat
atgattattattgacaaaggaagatctcatgatgagagaagtgcaatattaattgaaaat
ggagtgtataaaggctattgtttttatggtttaaattatcaaattaataatatagaaatt
ttaaaaaagctaatcattccaatgcaaaataacagagatactaaaaacattatccaaggt
tatttaagaaaacgaaaagtaatgaaagtagtaacattttaa
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