Flavobacterium sediminis: DI487_00125
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Entry
DI487_00125 CDS
T06625
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fse
Flavobacterium sediminis
Pathway
fse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DI487_00125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fse03019
]
DI487_00125
Enzymes [BR:
fse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DI487_00125
Messenger RNA biogenesis [BR:
fse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DI487_00125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
SUa-2TM
RecX_HTH2
Flavi_DEAD
UTP25_NTPase-like
Utp25_C
P-loop_SecA
AAA_7
HEM4
UvrD-helicase
KRAP_IP3R_bind
Motif
Other DBs
NCBI-ProteinID:
AWM12438
UniProt:
A0A2U8QQU2
LinkDB
All DBs
Position
34531..35649
Genome browser
AA seq
372 aa
AA seq
DB search
MNFKNLNLIDPILQAVTEVGYTQATKIQYRTIPYILEGKDLIGCAQTGTGKTAAFAIPIL
QQLSQRAYSTPNIKTLVLTPTRELAIQIEENFKMYGKHLPLTQLVIFGGVSQDKQVLALK
RKVDILIATPGRLLDLMHQGHIDLSKLEILVLDEADRMLDLGFVNDVKKILSKIPKKRQT
LFFSATMPENIRKFANSILYQPVEINVTPVSSTAQTIKQSVYFVEKNEKTKLLIDLLNNP
SIPRSLVFTRTKHGANRLARQLEQKGIHSAAIHGNKSQNARQKALDDFKTSKIRVLIATD
IAARGIDIEELPHVVNYDLPNVPETYVHRIGRTGRAGIEGTAISFCNDEEKVNLRNIQKL
IGFNMPVNSNAK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaaaaatttaaaccttatagatcctattcttcaggcagtaactgaagtagga
tatacacaagctactaaaatacagtatcgtacaataccttatattttagaaggcaaagat
cttataggctgtgcccaaacgggtacgggaaaaacagcagcatttgctatacccatttta
cagcaattaagccaaagagcttattcaacaccaaacatcaaaacgttagttttaactcca
acgcgggaactagccatacaaattgaagaaaatttcaaaatgtatggtaagcatttgccc
ttaactcaacttgttatttttggcggtgtttcacaagacaaacaggtattagcactaaaa
agaaaagtagatatacttattgctacaccgggaagattattagatcttatgcatcaagga
cacatcgatttatccaaactggaaattttagtattggacgaagccgaccgtatgctcgac
ttgggatttgttaacgatgttaaaaagatcttatcaaaaattcctaaaaagagacaaaca
ctcttcttttcggctactatgcctgaaaacataaggaaatttgcaaactctatcctatat
cagcccgttgaaataaatgtaacacctgtttcttctactgctcagactataaaacaatct
gtctattttgtagaaaaaaacgaaaaaacaaaacttctcatcgatctgttaaacaatccg
tctattcctcgttcactagtctttacacgtaccaaacacggagctaataggctggcaaga
caattagaacaaaaagggattcattcagcggcaatacacgggaacaaatctcaaaatgcc
agacaaaaagcccttgacgattttaagaccagtaagatacgagtacttatcgctacagat
attgctgcccgaggaatcgatattgaagaactgcctcatgtagtgaactatgatcttccg
aatgttcctgaaacctatgtccacagaataggcagaaccggacgcgccggaattgaaggc
actgctatttcattttgtaatgatgaggaaaaagtgaacctgagaaacattcaaaaatta
ataggttttaatatgcctgtaaattcaaatgcaaaataa
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