Flavobacterium sediminis: DI487_00480
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Entry
DI487_00480 CDS
T06625
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fse
Flavobacterium sediminis
Pathway
fse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DI487_00480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fse03019
]
DI487_00480
Enzymes [BR:
fse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DI487_00480
Messenger RNA biogenesis [BR:
fse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DI487_00480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
ERCC3_RAD25_C
Utp25_C
PRAI
HEM4
Motif
Other DBs
NCBI-ProteinID:
AWM12501
UniProt:
A0A2U8QR06
LinkDB
All DBs
Position
100260..101540
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AA seq
426 aa
AA seq
DB search
MQFSDLNLHRSLLEAIKDKGYTAPTLIQQQAIPEILNGNDIVGCAQTGTGKTAAFAIPIL
EILHPIVGSAKKRKFIRTVVVTPTRELAMQIQANFDEYGKYMNTRTLVLYGGVNQNPQVQ
ALKEGVDIVITTPGRFLDLYKQEFISLDQMHHLVIDEADLMLDMGFINDVKKIVKLSPEN
RQTLLFSATMPFEIRVLADSLLKNPKYIIVDPVSSTSKNIKQSIYFVEKEDKKKLLAHII
KEDAIEQAIVFVRTKHGADNVVKSLEKQNISAVAIHGDKSQSARIKALERFKNKEVNFLI
ATDIAARGLDIEQLPIVINYDLPNIPETYIHRIGRTGRAENEGRSISFCGKDEKTYWQDI
VKLTQAKIKEITDHPFPWKESSDTNTSAPPKKDFRNNNKSQANKNKSKKSNSRKSDNSKK
NKKRWY
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcagatttaaacctacacagaagtttacttgaagctattaaagacaaaggg
tatactgctccgacactgatccagcaacaggccattccggaaatattaaacggaaacgac
attgtaggatgcgcacaaaccggtaccggtaaaacggctgcttttgctattcctatttta
gagatactacatcctattgtaggttctgctaaaaaaagaaaattcatccgtactgtggtc
gttacacctacccgggaattggctatgcaaattcaggctaatttcgatgaatatggaaag
tacatgaatacccgtactttagtattatatggcggtgttaatcaaaacccgcaggttcaa
gctttaaaagaaggagtagatattgttattacaactccgggacgctttttagacctgtac
aaacaagaattcatcagtctggatcaaatgcaccatctggtgattgatgaagccgacctg
atgctggatatgggttttattaatgatgtgaagaaaatcgttaagctatcacccgaaaac
aggcaaacacttttgttttcagctaccatgccatttgaaattcgtgtgctagccgattct
cttttaaagaatcccaaatatattattgtagacccggtttctagtacttcaaaaaacatc
aagcaatctatttattttgttgaaaaagaagacaagaaaaagttactggcacatattata
aaggaagatgctattgaacaagctattgtttttgttcgaacgaaacacggagctgacaat
gttgttaaatccttagaaaaacaaaacatttctgcagtagccatacacggtgacaaatcg
caatcggctcgtatcaaagctttagaacgatttaaaaacaaagaagttaactttttaata
gcgacagacattgccgctcgaggtctggatattgaacaattgcctattgtaatcaattat
gatctgccaaatattccggaaacctatatccatagaatcggaagaacaggaagggcagaa
aatgaaggtagatccatttctttttgtggtaaagatgagaaaacctactggcaggatatt
gtaaaactgacgcaagccaaaataaaagaaataactgatcatcctttcccatggaaagaa
agttcagacacaaacacttctgctcctcccaaaaaggatttcagaaacaacaataaatct
caagccaataaaaacaaatccaagaaatcaaattccagaaaatcagataattcaaagaaa
aacaaaaaacgctggtattaa
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