Flavobacterium sediminis: DI487_00995
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Entry
DI487_00995 CDS
T06625
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fse
Flavobacterium sediminis
Pathway
fse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DI487_00995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fse03019
]
DI487_00995
03009 Ribosome biogenesis [BR:
fse03009
]
DI487_00995
Enzymes [BR:
fse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DI487_00995
Messenger RNA biogenesis [BR:
fse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DI487_00995
Ribosome biogenesis [BR:
fse03009
]
Prokaryotic type
rRNA helicases
DI487_00995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RRM_5
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWM12587
UniProt:
A0A2U8QR46
LinkDB
All DBs
Position
218050..219843
Genome browser
AA seq
597 aa
AA seq
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MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPILLEKDTDIVALAQTGTGKTAAFGFP
LIQKINVDDRRTQALVLSPTRELCLQITNEIKQYSKYVKELHTVAIYGGANINEQAKEIK
RGAQIIVATPGRMQDMINRGMVNIKNINYCVLDEADEMLNMGFYDDITAILSDTPDEKST
WLFSATMPQEVARIAREFMRKPLEITVGHKNSGSQNVSHEFYLVNARDRYAALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYNAAALHGDLSQAQRDAVMKSFRGRQIQMLVATD
VAARGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKSGTSMVIVTKSELRKINQIEKI
IKTKFEEKPIPSGIEICEIQLFHLANKIKDVEIDHEIDSYLPAIEEVLIDLSKEELIKRI
VSVEFNRFLAYYKKSRDISAETSSNRRGEIPTDGAVRYFINIGSRDNFDWMSLKDFLRDT
LELGRDDIFKVDVKEGFSFFNTDAEHVDRVMNTMNNIRLEGRKINVEISKNDGSRNQGRR
DHGGRDRRNSGNRERRGNSDRKFEGRKDGKPSGERKGRRSNDTEKGFFDRAKRSRRS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaacaattgggtcttaatgaatcgctactgctggcgataaaagacctt
ggatttgaaaatccatcggaagtacaggaaaaggcgattcccattttattggaaaaagac
actgatattgttgcactggcacaaacaggtactggtaaaacggcagcatttggttttccg
cttattcagaaaatcaatgtcgatgacagaagaactcaggctttggtgctctcacctaca
cgcgaactttgtttgcagattaccaatgaaataaagcaatattccaaatacgtaaaagaa
ctacatactgtagccatttacggtggtgctaacattaatgaacaggctaaagagatcaaa
cgcggagcacagattattgttgcaactcccggtagaatgcaggatatgatcaaccgtggt
atggtaaacatcaaaaacatcaactattgtgttttagatgaagctgacgaaatgttgaac
atgggattctatgacgacatcacagccattttatcagacacaccggatgaaaaatcaact
tggttattctcggctactatgcctcaggaagtagcacgtattgcacgcgaattcatgcgt
aaaccacttgaaattacggttggacacaaaaactcaggctctcagaatgtatcccacgaa
ttctatttagtgaatgctcgtgaccgttatgcggctttaaaacgtttagcagatgctaac
ccggatatcttctccgttgttttctgtagaaccaaaagagacacgcaggccattgctgaa
aaattaattgaagacggatacaatgctgctgcactacacggtgacctttctcaggcgcaa
cgtgatgctgtaatgaaatcgtttagaggacgacaaatacagatgttagttgctaccgac
gtagctgctcgtggtattgatgttgacgatataacacacgtaatcaactatcagttaccg
gatgaagtagaaacctatacccaccgttccggtcgtaccggtcgtgccggaaaatcaggt
acttctatggttattgtaacaaagagtgagttgcgtaagatcaaccagattgaaaagatc
attaaaacgaaattcgaagaaaaaccgattccttcaggtattgaaatctgcgaaattcag
ttgttccacttagcgaataagatcaaagacgtagagatcgatcacgaaattgactcgtat
ttaccggctatagaggaagttttaattgacttgtcaaaagaagaactgatcaaacgtatc
gtttccgttgaattcaaccgtttcttagcttactataaaaaatcgagagacatcagtgcg
gaaacttcttcaaacagaagaggtgaaatccctactgacggagctgtacgctatttcatt
aacattggctcaagagataattttgactggatgtcacttaaagatttcttacgcgatacg
ttagaattaggtcgtgatgatatctttaaagtagatgtaaaagaaggtttttcattcttt
aatactgatgctgaacatgttgaccgtgtaatgaacacgatgaacaatattcgtttagaa
gggcgcaagatcaatgtggaaatttctaaaaatgacggaagccgaaatcaagggcgtaga
gatcatggcggaagagaccgaagaaattcaggcaaccgtgaacgaagaggaaattctgat
cgcaagtttgaaggacgaaaagacggaaaaccatccggtgaacgcaaaggaagaagaagt
aacgatactgagaaaggcttttttgacagggcaaaacgctccagaagaagctag
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