Flavobacterium sediminis: DI487_02600
Help
Entry
DI487_02600 CDS
T06625
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fse
Flavobacterium sediminis
Pathway
fse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DI487_02600 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fse03019
]
DI487_02600 (rny)
Messenger RNA biogenesis [BR:
fse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DI487_02600 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF99
KH_2
KH-I_KHDC4-BBP
Ribosomal_S18
DUF2613
Motif
Other DBs
NCBI-ProteinID:
AWM12865
UniProt:
A0A2U8QSP1
LinkDB
All DBs
Position
545507..547066
Genome browser
AA seq
519 aa
AA seq
DB search
MDIISIIGIVLGIALGFGIAKFLEKSNVSNLIKNAKKEAASILKDAKAEAESIKKDKILQ
AKEKFLELKAEHEQVILSRDKKITDAEKRTRDKESQVSNELAKNKKLNEELEHKVSDYNN
RVEFLEKKQQEIEKVHRSQVEQLEVISGLSAEEAKNQLVESLKAEAKTNAMSFIQDTMEE
AKMTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSCFDPVRREIARLALHKLVTDGRIHPARIEEVVAKTQKQIEEEIIE
VGKRTVIDLGIHGLHPELIKIVGRMKYRSSYGQNLLQHSREVANLCGIMAAELGLNVKLA
KRAGLLHDIGKVPETESEMPHAILGMQWAEKYGEKDEVCNAIGAHHDEIEMKYLISPIIQ
VCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFNGVKNAYAIQAGRELRVIVESEKVSD
EMAATLSFEISQKIQTEMTYPGQVKITVIRETRSVNIAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggatataataagtataataggaattgttttaggaattgcattaggtttcggtattgct
aagtttctggaaaaaagcaacgtatcaaacctgatcaaaaatgcaaaaaaagaagctgcc
tctattttgaaagatgccaaggcagaagctgaatcaatcaaaaaagataaaatcttacag
gctaaagaaaagtttttagaattaaaagctgagcacgaacaagtaatcttgtcaagagac
aaaaagatcacggatgcagaaaaaagaacacgcgataaagaatcgcaagtatctaatgag
ttagctaaaaacaaaaaactgaacgaagagttagaacacaaagtatctgactacaacaat
cgcgttgagtttttagagaaaaaacaacaagagatagaaaaagttcaccgcagtcaggta
gaacaattagaagtgatttccggactttctgctgaagaagctaaaaaccaattggtagaa
agcttaaaagctgaagctaaaactaatgctatgtcattcatccaggatacgatggaagaa
gcaaaaatgacagcgcaacaagaagcaaagaaaatcattatcaacactattcaaagagtc
ggtacagaagaagctgtagaaaactgtgtttctgtattcaacatcgaatctgacgacgtt
aaaggtagaatcatcggacgtgaaggacgtaacatcagagccttagaagctgctaccggt
gttgagatcattgtcgacgatacacctgaagctattatcttatcttgctttgatccggta
agaagagagatcgcacgcttagctcttcacaaattagttactgacggacgtatccacccg
gctcgtatcgaagaagtagttgctaagactcagaaacaaattgaagaggaaatcattgaa
gtaggtaaacgtacagttattgatttaggtattcacggattacatcctgaattgattaaa
atcgtaggtagaatgaaataccgttcatcttacggacaaaacttattacaacactcccgt
gaagtagctaacctttgtggtatcatggctgccgagttaggcttaaatgtaaaattagct
aaacgtgccggacttttacacgatatcggtaaagtgccggaaacagaaagcgaaatgcca
cacgcaatcttaggtatgcaatgggctgaaaaatatggtgagaaagacgaagtatgtaat
gctattggagcgcaccacgatgaaattgaaatgaaatacctgatctcacctatcattcag
gtgtgtgatgctatttcaggagctcgaccgggagcaagacgtcaggtattagactcttac
attcaacgtttgaaagacttggaagacattgctttcggattcaacggtgttaaaaacgcc
tatgcaatccaagccggtagggaactacgtgtaatcgttgaaagtgaaaaagtttcagac
gaaatggctgcaacactttcttttgagatttctcaaaaaatccagactgaaatgacctat
ccgggacaggtaaaaattaccgtgatccgcgaaaccagatctgttaatattgcaaaataa
DBGET
integrated database retrieval system
