Flavobacterium sediminis: DI487_08925
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Entry
DI487_08925 CDS
T06625
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
fse
Flavobacterium sediminis
Pathway
fse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DI487_08925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fse03400
]
DI487_08925
Enzymes [BR:
fse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DI487_08925
DNA repair and recombination proteins [BR:
fse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DI487_08925
RecFOR pathway proteins
DI487_08925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_22
AAA_3
Mg_chelatase
AAA_14
nSTAND3
Rad17
AAA_18
RNA_helicase
AAA_16
AAA_28
TIP49
AAA_33
TsaE
NB-ARC
AAA_17
ABC_tran
AAA_PrkA
NPHP3_N
NACHT
Sigma54_activ_2
Torsin
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AWM13969
UniProt:
A0A2U8QV61
LinkDB
All DBs
Position
1915131..1916153
Genome browser
AA seq
340 aa
AA seq
DB search
MNENLDPNKERFTPQEIDIERALRPLSFDDFAGQDQVLENLKVFVQAANLRDDALDHTLF
HGPPGLGKTTLANILANELGVGIKITSGPVLDKPGDLAGLLTNLEERDILFIDEIHRLSP
VVEEYLYSAMEDYKIDIMIETGPNARTVQINLNPFTLVGATTRSGLLTAPMRARFGIQSR
LQYYNTELLTTIVQRSASILKMPISMEAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNG
KIDIEIAKFALRALNVDAHGLDEMDNKILTTVIDKFKGGPVGLTTLATAVSESGETIEEV
YEPFLIQEGFIIRTPRGREVTEKAYKHLGRIKGFNQGELF
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaatttggatccgaataaagaacgttttacgcctcaggaaatagatatagaa
agagctttacggccactttcttttgatgattttgccgggcaggatcaggttttggaaaac
ttgaaggtctttgttcaggctgccaatctgagagatgatgctctggatcatacattgttt
catggaccaccgggtttggggaaaacaacattggctaacatcttggcaaatgaactagga
gtaggaattaagattacttcaggtccggttttagataagccaggagatttggccggattg
ttgactaatttggaggaacgggatattctgtttatcgatgagatccatcgtttaagtccg
gttgtggaggaatacctttactctgctatggaggattataaaattgatataatgatagaa
acagggcctaatgcacgtacggttcagatcaatttaaatccttttactctggttggagct
acaacgcgttctggattgttgactgcaccgatgagagctcgtttcgggattcaaagtcgt
ttacaatattataatactgaattactgacaacaattgtgcaacgtagtgcctctattttg
aaaatgcctatatcaatggaagcagcaatcgaaatcgcaggaagaagtcgggggacgcct
cgtattgctaatgctttattgagaagagttcgcgattttgcacaaataaaagggaatgga
aaaatagacattgagatcgctaaatttgctttgagagctctaaatgttgatgcacacgga
ttggatgaaatggataataagatattgacaaccgttatagataaattcaaaggaggtcct
gtcggcttaacaactttggctacagcagtttcagaaagcggtgaaacgattgaagaagta
tatgagccgtttctgattcaagaagggtttattatcagaactcctagaggtcgagaagtc
acagagaaagcttacaagcatttaggaaggataaaagggtttaatcaaggagaattgttt
taa
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